Variant report

Variant	rs6455926
Chromosome Location	chr6:164288805-164288806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12201999	0.93[EUR][1000 genomes]
rs12526720	0.93[EUR][1000 genomes]
rs12528228	0.93[EUR][1000 genomes]
rs12528265	0.93[EUR][1000 genomes]
rs6914507	0.81[EUR][1000 genomes]
rs6916412	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv1798922	chr6:164257563-164298780	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164285000-164289000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:164285000-164293600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:164287200-164289000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:164287200-164289000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:164288000-164289200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:164288400-164289000	Active TSS	Ovary	ovary
7	chr6:164288600-164289000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:164288600-164289000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:164288600-164289000	Active TSS	Stomach Smooth Muscle	stomach
10	chr6:164288600-164289000	Flanking Active TSS	K562	blood
11	chr6:164288800-164289000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:164288800-164289200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr6:164288800-164289200	Active TSS	Osteobl	bone
14	chr6:164288800-164289400	Active TSS	Brain Anterior Caudate	brain
15	chr6:164288800-164289400	Active TSS	Duodenum Smooth Muscle	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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