Variant report

Variant	rs6456106
Chromosome Location	chr6:167129135-167129136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11754784	0.88[CEU][hapmap]
rs11966441	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12206980	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12660310	0.88[CEU][hapmap]
rs12660333	0.94[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2294437	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2345259	0.93[CEU][hapmap]
rs3734602	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3734603	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3817828	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs4710081	1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4710084	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4710085	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6456105	0.94[CEU][hapmap];0.84[AMR][1000 genomes]
rs6456109	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6456110	0.88[YRI][hapmap]
rs66549668	0.85[EUR][1000 genomes]
rs6928848	0.93[CEU][hapmap]
rs7766655	0.88[CEU][hapmap]
rs874276	0.88[CEU][hapmap]
rs874277	0.93[CEU][hapmap]
rs9295366	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9356512	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9459725	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv432984	chr6:167018915-167181613	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1020888	chr6:167059455-167136562	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv538540	chr6:167059455-167136562	Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2754464	chr6:167059528-167130749	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv482478	chr6:167071366-167265821	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
10	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
11	nsv1022866	chr6:167108740-167345629	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167120800-167130400	Weak transcription	Gastric	stomach
2	chr6:167125600-167129200	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr6:167125800-167130400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:167126000-167130400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:167126400-167129200	Enhancers	Brain Cingulate Gyrus	brain
6	chr6:167126400-167129200	Enhancers	Fetal Muscle Leg	muscle
7	chr6:167126400-167129400	Enhancers	Brain Anterior Caudate	brain
8	chr6:167126600-167129200	Enhancers	Fetal Muscle Trunk	muscle
9	chr6:167126800-167135000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:167127200-167129200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:167127600-167130400	Weak transcription	Left Ventricle	heart
12	chr6:167127600-167134200	Weak transcription	Right Atrium	heart
13	chr6:167127600-167141200	Weak transcription	Right Ventricle	heart
14	chr6:167128200-167129200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:167128200-167130600	Weak transcription	Brain Angular Gyrus	brain
16	chr6:167128400-167129200	Enhancers	Brain Germinal Matrix	brain
17	chr6:167128400-167129200	Enhancers	Fetal Heart	heart
18	chr6:167128600-167129200	Enhancers	Rectal Smooth Muscle	rectum
19	chr6:167128800-167130800	Weak transcription	Brain Hippocampus Middle	brain

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