Variant report

Variant	rs6456686
Chromosome Location	chr6:25638469-25638470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12213891	0.84[JPT][hapmap]
rs212934	0.82[AMR][1000 genomes]
rs3804116	0.80[JPT][hapmap]
rs6931627	0.84[JPT][hapmap];0.80[EUR][1000 genomes]
rs7746950	0.85[JPT][hapmap]
rs7747078	0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7755903	0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs9467547	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9467558	0.80[JPT][hapmap];0.82[EUR][1000 genomes]
rs9467561	0.85[JPT][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883488	chr6:25592489-25731691	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25630200-25640800	Weak transcription	Pancreas	Pancrea
2	chr6:25636600-25640600	Enhancers	HepG2	liver
3	chr6:25636600-25641800	Weak transcription	A549	lung
4	chr6:25637000-25642600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:25637200-25638600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr6:25637600-25639200	Enhancers	Brain Germinal Matrix	brain
7	chr6:25637800-25638600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:25638000-25638600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:25638200-25638600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:25638200-25638800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:25638200-25639000	Enhancers	Fetal Brain Male	brain
12	chr6:25638400-25638600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:25638400-25638600	Enhancers	Fetal Intestine Large	intestine
14	chr6:25638400-25639000	Enhancers	Fetal Brain Female	brain
15	chr6:25638400-25639000	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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