Variant report

Variant	rs6457148
Chromosome Location	chr6:30066713-30066714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000204623	Chromatin interaction
ENSG00000204618	Chromatin interaction
ENSG00000204619	Chromatin interaction
ENSG00000066379	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 3 )

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432866	chr6:30026321-30080921	Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv884051	chr6:30059451-30071279	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv884050	chr6:30059451-30071330	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv884052	chr6:30059592-30067681	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv884053	chr6:30059592-30070538	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
6	nsv884054	chr6:30061361-30069525	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
7	nsv524794	chr6:30066031-30067892	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6457148	ZFP57	Cis_1M	lymphoblastoid	RTeQTL
rs6457148	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL
rs6457148	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30061000-30066800	Enhancers	Stomach Mucosa	stomach
2	chr6:30062000-30067000	Enhancers	Fetal Intestine Small	intestine
3	chr6:30062200-30067800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:30063400-30068400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:30063600-30068200	Weak transcription	HMEC	breast
6	chr6:30063800-30068000	Weak transcription	Lung	lung
7	chr6:30064000-30068000	Enhancers	HepG2	liver
8	chr6:30064400-30067000	Enhancers	Primary T cells from cord blood	blood
9	chr6:30064800-30066800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr6:30064800-30067200	Enhancers	K562	blood
11	chr6:30064800-30068400	Bivalent Enhancer	Fetal Intestine Large	intestine
12	chr6:30064800-30069600	Bivalent Enhancer	Fetal Thymus	thymus
13	chr6:30065400-30068800	Weak transcription	Gastric	stomach
14	chr6:30066200-30068000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:30066200-30068200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:30066600-30067800	Weak transcription	Rectal Mucosa Donor 31	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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