Variant report

Variant	rs6457916
Chromosome Location	chr6:36399673-36399674
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36391101..36392924-chr6:36399444..36401208,2	MCF-7	breast:
2	chr6:36388047..36404187-chr6:36407090..36418492,47	K562	blood:
3	chr6:36393812..36400727-chr6:36401208..36405433,7	K562	blood:
4	chr6:36390037..36391654-chr6:36397187..36400029,2	K562	blood:
5	chr6:36395657..36401114-chr6:36407932..36413764,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179165	Chromatin interaction
ENSG00000112078	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1233079	0.86[AFR][1000 genomes]
rs588566	1.00[AFR][1000 genomes]
rs605595	1.00[AFR][1000 genomes]
rs606544	1.00[AFR][1000 genomes]
rs614702	1.00[AFR][1000 genomes]
rs618656	1.00[AFR][1000 genomes]
rs644002	1.00[AFR][1000 genomes]
rs668606	0.86[AFR][1000 genomes]
rs673530	1.00[AFR][1000 genomes]
rs674047	1.00[AFR][1000 genomes]
rs675821	1.00[AFR][1000 genomes]
rs6905573	1.00[AFR][1000 genomes]
rs941973	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36392000-36400000	Weak transcription	Fetal Heart	heart
2	chr6:36392000-36404200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:36394200-36399800	Weak transcription	HMEC	breast
4	chr6:36396000-36399800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:36396000-36400000	Weak transcription	A549	lung
6	chr6:36397800-36400400	Enhancers	Placenta	Placenta
7	chr6:36398200-36400200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:36398400-36400600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:36398600-36399800	Weak transcription	HSMMtube	muscle
10	chr6:36398600-36400400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:36398800-36400800	Enhancers	Osteobl	bone
12	chr6:36399000-36399800	Enhancers	GM12878-XiMat	blood
13	chr6:36399000-36400000	Enhancers	Hela-S3	cervix
14	chr6:36399000-36400600	Enhancers	Placenta Amnion	Placenta Amnion
15	chr6:36399000-36410200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:36399200-36400200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:36399200-36400400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:36399200-36400800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:36399200-36400800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:36399400-36400200	Weak transcription	NH-A	brain
21	chr6:36399400-36400600	Enhancers	HSMM	muscle
22	chr6:36399600-36400000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:36399600-36400600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:36399600-36400600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:36399600-36400600	Enhancers	NHEK	skin

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