Variant report

Variant	rs6457990
Chromosome Location	chr6:11968764-11968765
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11966269..11970218-chr6:11973328..11977432,3	K562	blood:
2	chr6:11966998..11969837-chr6:12006330..12008967,3	K562	blood:
3	chr6:11964811..11966583-chr6:11966966..11969534,2	MCF-7	breast:
4	chr6:11963212..11964743-chr6:11967263..11969893,2	K562	blood:
5	chr6:11942682..11944906-chr6:11968224..11970350,2	K562	blood:

Variant related genes	Relation type
ENSG00000229896	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1117047	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1326143	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1326144	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1359618	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4357131	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4714062	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4714063	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6920727	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6927024	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6941983	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7765463	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs926666	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs926667	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9368995	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470570	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11961400-11972600	Weak transcription	Lung	lung
2	chr6:11964200-11969200	Weak transcription	Aorta	Aorta
3	chr6:11966000-11971400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:11966000-11972400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:11967400-11969400	Enhancers	NHEK	skin
6	chr6:11968000-11969600	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:11968200-11968800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:11968200-11969800	Enhancers	Primary B cells from cord blood	blood
9	chr6:11968400-11968800	Enhancers	Esophagus	oesophagus
10	chr6:11968400-11968800	Flanking Active TSS	GM12878-XiMat	blood
11	chr6:11968400-11969000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:11968400-11969000	Enhancers	Ovary	ovary
13	chr6:11968400-11969000	Enhancers	Right Atrium	heart
14	chr6:11968400-11969000	Enhancers	Osteobl	bone
15	chr6:11968400-11969200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:11968400-11969400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:11968400-11969400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr6:11968400-11969400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr6:11968400-11969600	Enhancers	Fetal Heart	heart
20	chr6:11968400-11970000	Enhancers	NHDF-Ad	bronchial
21	chr6:11968600-11968800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:11968600-11969000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:11968600-11969000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:11968600-11969200	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr6:11968600-11969200	Enhancers	Fetal Intestine Large	intestine
26	chr6:11968600-11969200	Enhancers	NHLF	lung
27	chr6:11968600-11969400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:11968600-11969400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:11968600-11969400	Enhancers	Fetal Stomach	stomach
30	chr6:11968600-11969400	Enhancers	Pancreas	Pancrea
31	chr6:11968600-11969400	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr6:11968600-11969600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:11968600-11969600	Flanking Active TSS	K562	blood
34	chr6:11968600-11969800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:11968600-11970000	Enhancers	Left Ventricle	heart
36	chr6:11968600-11971000	Weak transcription	HSMM	muscle

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