The 2.0 version of rSNPBase

Variant report

Variant rs645842
Chromosome Location chr1:84391779-84391780
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84362600-84403200 Weak transcription Fetal Brain Male brain
2 chr1:84366400-84392800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
3 chr1:84366800-84399400 Weak transcription Skeletal Muscle Male skeletal muscle
4 chr1:84368000-84394200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
5 chr1:84368200-84393400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
6 chr1:84368200-84393800 Weak transcription Rectal Smooth Muscle rectum
7 chr1:84368200-84394800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr1:84368400-84416600 Weak transcription NHLF lung
9 chr1:84368400-84428400 Weak transcription Pancreas Pancrea
10 chr1:84374200-84393000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr1:84376200-84392800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
12 chr1:84376800-84405000 Weak transcription Left Ventricle heart
13 chr1:84380800-84392200 Weak transcription NHEK skin
14 chr1:84381000-84393400 Weak transcription Breast Myoepithelial Primary Cells Breast
15 chr1:84381000-84394800 Weak transcription Muscle Satellite Cultured Cells --
16 chr1:84381000-84397400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr1:84382600-84409800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
18 chr1:84383200-84393000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr1:84383200-84408600 Weak transcription Adipose Nuclei Adipose
20 chr1:84384800-84406600 Weak transcription Aorta Aorta
21 chr1:84385000-84392200 Weak transcription Brain Cingulate Gyrus brain
22 chr1:84385000-84392400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr1:84385000-84392800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr1:84385000-84393200 Weak transcription Pancreatic Islets Pancreatic Islet
25 chr1:84385200-84408600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr1:84386200-84393800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr1:84386200-84397800 Weak transcription Brain Inferior Temporal Lobe brain
28 chr1:84386600-84392800 Weak transcription Brain Substantia Nigra brain
29 chr1:84386600-84392800 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr1:84386600-84401600 Weak transcription Stomach Smooth Muscle stomach
31 chr1:84386800-84392000 Weak transcription Brain Anterior Caudate brain
32 chr1:84386800-84398400 Weak transcription HSMMtube muscle
33 chr1:84386800-84398800 Weak transcription Skeletal Muscle Female skeletal muscle
34 chr1:84386800-84403200 Weak transcription NHDF-Ad bronchial
35 chr1:84387000-84408400 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr1:84387000-84408400 Weak transcription Fetal Muscle Leg muscle
37 chr1:84387000-84410000 Weak transcription Brain Germinal Matrix brain
38 chr1:84388800-84402200 Weak transcription HSMM muscle
39 chr1:84390000-84392400 Strong transcription Fetal Muscle Trunk muscle
40 chr1:84390200-84393400 Weak transcription iPS-15b Cell Line embryonic stem cell
41 chr1:84390200-84397600 Weak transcription K562 blood
42 chr1:84390600-84402400 Weak transcription Fetal Brain Female brain
43 chr1:84391000-84392400 Genic enhancers Brain Hippocampus Middle brain
44 chr1:84391200-84397800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
45 chr1:84391400-84392200 Strong transcription Fetal Stomach stomach
46 chr1:84391400-84392800 Weak transcription Brain Angular Gyrus brain

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Last update: Aug 31, 2015