Variant report

Variant	rs6458483
Chromosome Location	chr6:45968001-45968002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1338470	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1338471	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1361216	0.92[ASN][1000 genomes]
rs1416170	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1535108	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2022419	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2894658	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3777612	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4711840	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4714900	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6458479	0.87[ASN][1000 genomes]
rs6458480	0.87[ASN][1000 genomes]
rs6458481	0.87[ASN][1000 genomes]
rs6458482	0.87[ASN][1000 genomes]
rs6921959	0.87[ASN][1000 genomes]
rs7772905	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7773297	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9395142	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9472651	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9472653	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9689698	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv885867	chr6:45936223-45982976	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1025846	chr6:45955173-46047269	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2585595	chr6:45966912-45968343	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1008384	chr6:45967462-45968201	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45956800-45969000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:45957000-45969000	Weak transcription	Spleen	Spleen
3	chr6:45957000-45977400	Weak transcription	Fetal Intestine Large	intestine
4	chr6:45960400-45970400	Weak transcription	Small Intestine	intestine
5	chr6:45965800-45970400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:45966200-45969200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:45966200-45978200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:45966600-45968600	Weak transcription	Placenta	Placenta
9	chr6:45966600-45968800	Weak transcription	Right Atrium	heart
10	chr6:45966600-45969000	Weak transcription	Lung	lung
11	chr6:45966800-45969000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:45967800-45968200	Genic enhancers	Fetal Heart	heart
13	chr6:45967800-45968200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
14	chr6:45967800-45976600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr6:45968000-45968200	Enhancers	Psoas Muscle	Psoas
16	chr6:45968000-45968400	Genic enhancers	Left Ventricle	heart
17	chr6:45968000-45979400	Enhancers	Right Ventricle	heart

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