Variant report

Variant	rs645851
Chromosome Location	chr6:160397713-160397714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:160390128..160392194-chr6:160397530..160400730,3	MCF-7	breast:
2	chr6:160394260..160396359-chr6:160397478..160399583,2	MCF-7	breast:
3	chr6:160112849..160114728-chr6:160397708..160400092,2	K562	blood:
4	chr6:160392896..160396206-chr6:160397092..160402018,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112096	Chromatin interaction
ENSG00000197081	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432970	chr6:160323589-160436589	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv464087	chr6:160352497-160398330	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
3	nsv604996	chr6:160352497-160398330	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160391400-160398200	Weak transcription	Aorta	Aorta
2	chr6:160391400-160398400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:160391600-160398200	Weak transcription	Placenta	Placenta
4	chr6:160391800-160398000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:160391800-160398200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:160391800-160398800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:160391800-160402400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:160392000-160398000	Weak transcription	Brain Angular Gyrus	brain
9	chr6:160392000-160398000	Weak transcription	Fetal Stomach	stomach
10	chr6:160392000-160402400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:160392000-160402600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:160392200-160397800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:160392400-160397800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:160392400-160397800	Weak transcription	Brain Substantia Nigra	brain
15	chr6:160392400-160397800	Weak transcription	Stomach Mucosa	stomach
16	chr6:160392400-160397800	Weak transcription	NH-A	brain
17	chr6:160392400-160398000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:160392800-160397800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:160392800-160397800	Weak transcription	Brain Germinal Matrix	brain
20	chr6:160392800-160398000	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr6:160393400-160402800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:160393600-160400000	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr6:160394000-160398000	Weak transcription	Colonic Mucosa	Colon
24	chr6:160394000-160398400	Weak transcription	Fetal Brain Male	brain
25	chr6:160394200-160397800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr6:160394200-160398000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:160394200-160398000	Weak transcription	Pancreas	Pancrea
28	chr6:160394200-160399400	Weak transcription	Fetal Intestine Large	intestine
29	chr6:160394400-160397800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:160394400-160398000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr6:160394800-160398000	Weak transcription	Brain Hippocampus Middle	brain
32	chr6:160395200-160397800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:160395200-160397800	Weak transcription	Fetal Lung	lung
34	chr6:160395200-160397800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr6:160395200-160398000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr6:160395200-160398200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:160395200-160402200	Weak transcription	Fetal Kidney	kidney
38	chr6:160395400-160397800	Weak transcription	Brain Anterior Caudate	brain
39	chr6:160395400-160398000	Weak transcription	Duodenum Mucosa	Duodenum
40	chr6:160395600-160397800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:160395600-160397800	Weak transcription	Colon Smooth Muscle	Colon
42	chr6:160395600-160397800	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr6:160395600-160397800	Weak transcription	Osteobl	bone
44	chr6:160395600-160398000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:160395600-160398400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:160395600-160398400	Weak transcription	HMEC	breast
47	chr6:160395800-160397800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr6:160395800-160397800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr6:160395800-160397800	Weak transcription	Adipose Nuclei	Adipose
50	chr6:160395800-160397800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links