Variant report

Variant	rs6459032
Chromosome Location	chr6:13695134-13695135
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:13693942..13695810-chr6:13697116..13698961,2	K562	blood:
2	chr6:13693992..13697221-chr6:13708052..13711450,4	MCF-7	breast:
3	chr6:13614250..13617216-chr6:13693640..13696546,2	MCF-7	breast:
4	chr6:13691306..13693864-chr6:13695080..13696699,2	K562	blood:
5	chr6:13692267..13695145-chr6:44214144..44216207,2	K562	blood:
6	chr6:13694062..13696110-chr6:13700169..13702191,2	MCF-7	breast:
7	chr6:13682312..13686994-chr6:13694386..13698370,5	K562	blood:
8	chr6:13693617..13697413-chr6:13709395..13713836,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000096384	Chromatin interaction
ENSG00000010017	Chromatin interaction
ENSG00000261071	Chromatin interaction
ENSG00000225921	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7751897	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7757597	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13665600-13695200	Weak transcription	NHLF	lung
2	chr6:13667600-13695800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:13670000-13701600	Weak transcription	Esophagus	oesophagus
4	chr6:13673400-13695800	Weak transcription	Brain Angular Gyrus	brain
5	chr6:13677800-13699200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:13679000-13695600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:13679000-13695800	Weak transcription	Thymus	Thymus
8	chr6:13679000-13695800	Weak transcription	NHEK	skin
9	chr6:13679000-13699800	Weak transcription	Pancreas	Pancrea
10	chr6:13679000-13700400	Weak transcription	Right Ventricle	heart
11	chr6:13679000-13708400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:13679200-13696800	Weak transcription	Brain Germinal Matrix	brain
13	chr6:13679400-13695600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:13679600-13703400	Weak transcription	HUVEC	blood vessel
15	chr6:13681000-13695800	Weak transcription	Liver	Liver
16	chr6:13681000-13695800	Weak transcription	NH-A	brain
17	chr6:13681000-13708600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr6:13684800-13695800	Weak transcription	Fetal Lung	lung
19	chr6:13684800-13699800	Strong transcription	Dnd41	blood
20	chr6:13685200-13696000	Weak transcription	Brain Substantia Nigra	brain
21	chr6:13686400-13709600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:13686800-13697400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:13687000-13695800	Weak transcription	Fetal Muscle Trunk	muscle
24	chr6:13688200-13703200	Weak transcription	Lung	lung
25	chr6:13688800-13703200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr6:13689000-13697600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:13689200-13696000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:13689200-13703200	Weak transcription	Spleen	Spleen
29	chr6:13689600-13695800	Weak transcription	Fetal Brain Male	brain
30	chr6:13689800-13697200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:13689800-13698400	Weak transcription	Psoas Muscle	Psoas
32	chr6:13689800-13702400	Weak transcription	Fetal Stomach	stomach
33	chr6:13690000-13696000	Weak transcription	Fetal Muscle Leg	muscle
34	chr6:13690400-13695200	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr6:13690400-13695400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:13690400-13696400	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr6:13690400-13707600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:13690600-13695800	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr6:13690600-13696400	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr6:13690600-13707600	Weak transcription	Fetal Kidney	kidney
41	chr6:13690600-13708400	Weak transcription	Aorta	Aorta
42	chr6:13690800-13695800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr6:13690800-13697200	Weak transcription	Colon Smooth Muscle	Colon
44	chr6:13690800-13703200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr6:13690800-13703600	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:13691200-13695400	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr6:13691200-13695800	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr6:13691200-13703200	Weak transcription	Brain Anterior Caudate	brain
49	chr6:13691200-13708000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr6:13692000-13707600	Weak transcription	Stomach Smooth Muscle	stomach

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