Variant report

Variant	rs6460317
Chromosome Location	chr7:66390255-66390256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:66385788..66388541-chr7:66389275..66392826,4	MCF-7	breast:
2	chr7:66384799..66388848-chr7:66389441..66396879,12	K562	blood:

Variant related genes	Relation type
ENSG00000106609	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10807707	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12534637	0.93[EUR][1000 genomes]
rs1830070	0.92[EUR][1000 genomes]
rs4236209	0.84[EUR][1000 genomes]
rs4718421	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718428	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6971897	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs868961	0.85[EUR][1000 genomes]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs6460317	RP4-756H11.3	cis	Thyroid	GTEx
rs6460317	RP4-756H11.3	cis	Nerve Tibial	GTEx
rs6460317	RP4-756H11.3	cis	Artery Tibial	GTEx
rs6460317	RP4-756H11.3	cis	Esophagus Mucosa	GTEx
rs6460317	RP4-756H11.3	cis	Esophagus Muscularis	GTEx
rs6460317	RP4-756H11.3	cis	Skin Sun Exposed Lower leg	GTEx
rs6460317	RP4-756H11.3	cis	lung	GTEx

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66387400-66395000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:66387400-66395000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:66387600-66390400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr7:66387600-66390400	Weak transcription	HSMMtube	muscle
5	chr7:66387600-66393400	Weak transcription	Fetal Heart	heart
6	chr7:66387600-66394800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:66387600-66394800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:66387600-66394800	Weak transcription	Esophagus	oesophagus
9	chr7:66387600-66395000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:66387600-66395200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:66387600-66395200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:66387600-66407200	Weak transcription	NH-A	brain
13	chr7:66387600-66409800	Weak transcription	Fetal Kidney	kidney
14	chr7:66387600-66428000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:66387800-66390400	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr7:66387800-66391200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:66387800-66391800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:66387800-66397200	Weak transcription	Osteobl	bone
19	chr7:66388000-66390400	Weak transcription	HSMM	muscle
20	chr7:66388000-66391600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:66388000-66394600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:66388200-66391400	Genic enhancers	Fetal Muscle Leg	muscle
23	chr7:66388200-66392200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:66388200-66393400	Weak transcription	HMEC	breast
25	chr7:66388200-66395000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:66388200-66406800	Weak transcription	NHLF	lung
27	chr7:66388400-66390600	Genic enhancers	Primary B cells from peripheral blood	blood
28	chr7:66388400-66390600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:66388400-66393400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr7:66388400-66394600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr7:66388400-66401200	Weak transcription	Fetal Lung	lung
32	chr7:66388400-66406800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr7:66388400-66406800	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr7:66388600-66390600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr7:66388600-66391000	Weak transcription	Psoas Muscle	Psoas
36	chr7:66388600-66391400	Strong transcription	GM12878-XiMat	blood
37	chr7:66388600-66392200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr7:66388600-66394600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr7:66388600-66395000	Strong transcription	NHEK	skin
40	chr7:66388600-66395400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr7:66388600-66396000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr7:66388600-66398000	Weak transcription	Placenta	Placenta
43	chr7:66388600-66403600	Weak transcription	HUVEC	blood vessel
44	chr7:66388600-66403800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr7:66388600-66406800	Weak transcription	NHDF-Ad	bronchial
46	chr7:66388800-66390600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr7:66388800-66390600	Strong transcription	Fetal Stomach	stomach
48	chr7:66388800-66391400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr7:66388800-66394000	Weak transcription	Colonic Mucosa	Colon
50	chr7:66388800-66395200	Weak transcription	Brain Substantia Nigra	brain

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