Variant report

Variant	rs6460530
Chromosome Location	chr7:69284420-69284421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6460533	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69277800-69285000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr7:69277800-69285000	Enhancers	Fetal Heart	heart
3	chr7:69277800-69286200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:69278400-69286000	Enhancers	Rectal Smooth Muscle	rectum
5	chr7:69279000-69287000	Weak transcription	GM12878-XiMat	blood
6	chr7:69279800-69285800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:69279800-69289000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:69279800-69289600	Weak transcription	Psoas Muscle	Psoas
9	chr7:69280200-69287200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr7:69280800-69284600	Enhancers	Fetal Stomach	stomach
11	chr7:69280800-69286200	Enhancers	Fetal Intestine Small	intestine
12	chr7:69281000-69285800	Enhancers	Fetal Muscle Leg	muscle
13	chr7:69281000-69286000	Enhancers	Colon Smooth Muscle	Colon
14	chr7:69281200-69285400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:69281400-69284600	Enhancers	Brain Angular Gyrus	brain
16	chr7:69281400-69284600	Enhancers	Brain Hippocampus Middle	brain
17	chr7:69281600-69284600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr7:69281800-69284600	Enhancers	Brain Anterior Caudate	brain
19	chr7:69281800-69284800	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr7:69281800-69285800	Enhancers	Fetal Lung	lung
21	chr7:69282000-69284600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr7:69282000-69284600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr7:69282000-69284600	Enhancers	Brain Cingulate Gyrus	brain
24	chr7:69282000-69284800	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr7:69282000-69285200	Enhancers	Fetal Brain Male	brain
26	chr7:69282600-69284600	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr7:69282600-69285000	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr7:69282800-69287200	Weak transcription	Right Atrium	heart
29	chr7:69282800-69288000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr7:69282800-69288200	Weak transcription	Thymus	Thymus
31	chr7:69282800-69289400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr7:69282800-69289600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:69283000-69284600	Weak transcription	Fetal Muscle Trunk	muscle
34	chr7:69283000-69286400	Weak transcription	Ovary	ovary
35	chr7:69283000-69287400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr7:69283200-69288200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr7:69283200-69289000	Weak transcription	Fetal Thymus	thymus
38	chr7:69283200-69289600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr7:69283200-69289600	Weak transcription	HSMM	muscle
40	chr7:69283400-69285200	Enhancers	Fetal Brain Female	brain
41	chr7:69283400-69285800	Enhancers	Brain Germinal Matrix	brain
42	chr7:69283400-69289400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr7:69283400-69291800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr7:69283400-69292600	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr7:69283600-69284800	Enhancers	Fetal Intestine Large	intestine
46	chr7:69283600-69287200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr7:69283800-69284600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr7:69283800-69284600	Enhancers	Brain Substantia Nigra	brain
49	chr7:69284000-69284600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
50	chr7:69284000-69284600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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