Variant report

Variant	rs6460664
Chromosome Location	chr7:71000614-71000615
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10224027	0.89[ASN][1000 genomes]
rs10235508	0.89[ASN][1000 genomes]
rs10237318	0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs10242031	0.89[ASN][1000 genomes]
rs10244344	0.82[CHB][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs10447533	1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs11763708	0.87[ASN][1000 genomes]
rs11769266	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11773571	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs28658503	0.90[ASN][1000 genomes]
rs28709000	0.89[ASN][1000 genomes]
rs4557585	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4717604	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs4719140	0.82[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs4719141	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.92[JPT][hapmap];0.93[MKK][hapmap];0.86[TSI][hapmap];0.82[YRI][hapmap];0.89[ASN][1000 genomes]
rs4719142	0.89[ASN][1000 genomes]
rs55780804	0.88[ASN][1000 genomes]
rs58587487	0.91[ASN][1000 genomes]
rs59543111	0.88[ASN][1000 genomes]
rs62459927	0.88[ASN][1000 genomes]
rs62459931	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62459956	0.88[ASN][1000 genomes]
rs6460670	0.89[ASN][1000 genomes]
rs6460671	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs6460673	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs6460674	0.88[ASN][1000 genomes]
rs6960915	0.89[ASN][1000 genomes]
rs6973274	0.89[ASN][1000 genomes]
rs6977973	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs7777634	0.89[ASN][1000 genomes]
rs7779947	0.89[ASN][1000 genomes]
rs7786397	0.88[ASN][1000 genomes]
rs7799605	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[JPT][hapmap];0.81[TSI][hapmap];0.89[ASN][1000 genomes]
rs7803346	0.84[CEU][hapmap];0.89[ASN][1000 genomes]
rs7805159	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7806531	0.83[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033783	chr7:70955277-71023877	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70983000-71007800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:70986800-71006600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:70988000-71003400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:70988000-71023800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:70998600-71001200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:70999000-71001800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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