Variant report

Variant	rs6460831
Chromosome Location	chr7:11681776-11681777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10247831	0.97[ASN][1000 genomes]
rs10499418	0.97[ASN][1000 genomes]
rs12699252	0.97[ASN][1000 genomes]
rs13236165	0.97[ASN][1000 genomes]
rs1526550	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1526551	0.92[ASN][1000 genomes]
rs2354964	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs35761851	0.90[ASN][1000 genomes]
rs4720999	0.90[ASN][1000 genomes]
rs6958479	0.97[ASN][1000 genomes]
rs719914	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs725588	0.95[ASN][1000 genomes]
rs7807044	0.98[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028326	chr7:11221209-11754436	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538733	chr7:11221209-11754436	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1023665	chr7:11457493-11773517	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv887606	chr7:11473561-11771288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11676400-11681800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:11681400-11682200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:11681400-11682800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:11681600-11681800	Enhancers	A549	lung
5	chr7:11681600-11682200	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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