Variant report

Variant	rs6460842
Chromosome Location	chr7:11825759-11825760
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10279006	0.85[AFR][1000 genomes]
rs2355086	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2355090	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2355091	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4721011	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58260576	0.85[AFR][1000 genomes]
rs61577547	0.87[AFR][1000 genomes]
rs7782151	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9632554	0.85[AFR][1000 genomes]
rs9632566	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv830905	chr7:11793513-11941594	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11811800-11825800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:11819600-11825800	Weak transcription	Placenta	Placenta
3	chr7:11821200-11830600	Weak transcription	Fetal Lung	lung
4	chr7:11824200-11834200	Weak transcription	Fetal Brain Male	brain
5	chr7:11825000-11826400	Enhancers	NH-A	brain
6	chr7:11825600-11825800	Active TSS	A549	lung
7	chr7:11825600-11826000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:11825600-11826000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:11825600-11826200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:11825600-11826200	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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