Variant report

Variant	rs6461527
Chromosome Location	chr7:21037716-21037717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10499517	0.92[AFR][1000 genomes]
rs10499523	1.00[AFR][1000 genomes]
rs11979428	0.96[AFR][1000 genomes]
rs17143681	0.89[AFR][1000 genomes]
rs6950587	0.96[AFR][1000 genomes]
rs6967630	0.89[AFR][1000 genomes]
rs7804621	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030726	chr7:20506095-21086719	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830920	chr7:21014535-21201580	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21033600-21037800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:21036800-21039000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:21037000-21039000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:21037000-21039000	Enhancers	HMEC	breast
5	chr7:21037000-21039000	Enhancers	NHEK	skin
6	chr7:21037000-21039200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:21037400-21038400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:21037600-21038000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:21037600-21038400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:21037600-21038400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:21037600-21038400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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