Variant report

Variant	rs6461902
Chromosome Location	chr7:26029812-26029813
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10236909	0.86[EUR][1000 genomes]
rs10267354	0.88[EUR][1000 genomes]
rs11981669	0.88[EUR][1000 genomes]
rs13239817	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs17152959	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs1986928	0.89[ASN][1000 genomes]
rs2012224	0.86[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs2893234	0.91[EUR][1000 genomes]
rs35055962	0.88[ASN][1000 genomes]
rs35797325	0.89[ASN][1000 genomes]
rs35855074	0.88[ASN][1000 genomes]
rs35931836	0.80[ASN][1000 genomes]
rs4521656	0.88[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs4719845	0.92[EUR][1000 genomes]
rs4719848	0.88[EUR][1000 genomes]
rs6461900	0.91[EUR][1000 genomes]
rs6461901	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6461903	0.92[EUR][1000 genomes]
rs6947773	0.90[EUR][1000 genomes]
rs6951118	0.87[ASN][1000 genomes]
rs6958870	0.88[CEU][hapmap];0.84[MEX][hapmap];0.96[TSI][hapmap];0.88[EUR][1000 genomes]
rs6972351	0.84[ASN][1000 genomes]
rs6973562	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs733645	0.88[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs745580	0.96[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs766838	0.92[EUR][1000 genomes]
rs7786527	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs7792195	0.86[ASN][1000 genomes]
rs7803271	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv606432	chr7:25988185-26223294	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases
4	nsv887848	chr7:26000137-26059739	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv606433	chr7:26007582-26050920	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv470188	chr7:26013958-26075094	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv464412	chr7:26013959-26073411	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv606434	chr7:26013959-26073411	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26028400-26030000	Enhancers	Fetal Lung	lung
2	chr7:26029200-26034400	Weak transcription	HepG2	liver
3	chr7:26029800-26034400	Weak transcription	Fetal Intestine Small	intestine
4	chr7:26029800-26034600	Weak transcription	Fetal Intestine Large	intestine

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