Variant report

Variant	rs6462401
Chromosome Location	chr7:3906446-3906447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10215004	0.80[CEU][hapmap]
rs10215340	0.85[CEU][hapmap]
rs10241703	0.80[CEU][hapmap]
rs10242459	1.00[CEU][hapmap]
rs10243770	0.82[CEU][hapmap]
rs10244636	1.00[CEU][hapmap]
rs10245389	0.87[CEU][hapmap]
rs10246449	1.00[CEU][hapmap]
rs10250659	0.93[CEU][hapmap]
rs10254099	0.80[CEU][hapmap]
rs10256741	1.00[CEU][hapmap]
rs10485864	0.93[CEU][hapmap]
rs10951374	0.93[CEU][hapmap]
rs11514766	0.87[CEU][hapmap]
rs11974190	1.00[CEU][hapmap]
rs12532171	0.93[CEU][hapmap]
rs12533946	0.92[CEU][hapmap]
rs12690803	0.93[CEU][hapmap]
rs12690804	1.00[CEU][hapmap]
rs12701262	0.93[CEU][hapmap]
rs1962784	0.80[CEU][hapmap]
rs1962785	0.80[CEU][hapmap]
rs2057920	1.00[CEU][hapmap]
rs2057921	1.00[CEU][hapmap]
rs2079376	0.87[CEU][hapmap]
rs2880159	0.93[CEU][hapmap]
rs4431501	1.00[CEU][hapmap]
rs6462407	1.00[CEU][hapmap]
rs6462411	0.87[CEU][hapmap]
rs6462413	0.93[CEU][hapmap]
rs6462447	0.82[CEU][hapmap]
rs6952864	0.93[CEU][hapmap]
rs6953282	1.00[CEU][hapmap]
rs6955650	0.82[CEU][hapmap]
rs6956479	0.87[CEU][hapmap]
rs6958535	0.80[CEU][hapmap]
rs6959835	0.82[CEU][hapmap]
rs6961561	1.00[CEU][hapmap]
rs6963674	1.00[CEU][hapmap]
rs6969052	0.82[CEU][hapmap]
rs6971803	0.82[CEU][hapmap]
rs6971873	0.82[CEU][hapmap]
rs6972806	0.87[CEU][hapmap]
rs6975723	0.93[CEU][hapmap]
rs6977305	0.87[CEU][hapmap]
rs6977844	1.00[CEU][hapmap]
rs917168	0.86[CEU][hapmap]
rs9655007	0.93[CEU][hapmap]
rs9655343	0.90[CEU][hapmap]
rs9655348	0.82[CEU][hapmap]
rs9986911	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1027624	chr7:3808366-3923408	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv538684	chr7:3808366-3923408	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1029406	chr7:3860894-4477095	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv538685	chr7:3860894-4477095	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1026410	chr7:3869104-4383606	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv887336	chr7:3870810-3934909	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv887337	chr7:3886254-3934909	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1019190	chr7:3896634-3943566	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1025497	chr7:3905444-4176032	Enhancers Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv538686	chr7:3905444-4176032	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3901200-3959600	Weak transcription	Pancreas	Pancrea
2	chr7:3902000-3907000	Weak transcription	Fetal Stomach	stomach
3	chr7:3902200-3907400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr7:3904600-3907200	Weak transcription	Fetal Lung	lung
5	chr7:3905000-3906600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:3905400-3907200	Enhancers	Adipose Nuclei	Adipose
7	chr7:3905800-3906600	Enhancers	HepG2	liver
8	chr7:3906000-3906600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:3906000-3906600	Enhancers	Left Ventricle	heart
10	chr7:3906000-3906600	Enhancers	Spleen	Spleen
11	chr7:3906200-3906600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr7:3906400-3906600	Weak transcription	Gastric	stomach

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