Variant report

Variant	rs6462936
Chromosome Location	chr7:39654435-39654436
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:39632294..39634662-chr7:39653376..39655988,2	K562	blood:
2	chr7:39652942..39654975-chr7:39661144..39662912,2	MCF-7	breast:
3	chr7:39646300..39651329-chr7:39653429..39657040,6	K562	blood:
4	chr7:39638958..39641769-chr7:39651985..39654836,2	K562	blood:
5	chr7:39604772..39606325-chr7:39653918..39656424,2	K562	blood:

Variant related genes	Relation type
ENSG00000106540	Chromatin interaction
ENSG00000231951	Chromatin interaction
ENSG00000227172	Chromatin interaction
ENSG00000241127	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11769865	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11982634	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12534684	0.80[ASN][1000 genomes]
rs2107710	0.87[EUR][1000 genomes]
rs2158548	0.83[EUR][1000 genomes]
rs2189837	0.83[EUR][1000 genomes]
rs34119925	0.80[ASN][1000 genomes]
rs3823742	0.83[EUR][1000 genomes]
rs4723887	0.83[EUR][1000 genomes]
rs4723891	0.83[EUR][1000 genomes]
rs6462937	0.88[EUR][1000 genomes]
rs6952363	0.83[EUR][1000 genomes]
rs6952866	0.87[EUR][1000 genomes]
rs6961667	0.83[EUR][1000 genomes]
rs6969070	0.88[EUR][1000 genomes]
rs6969523	0.87[EUR][1000 genomes]
rs7785049	0.83[EUR][1000 genomes]
rs7806651	0.92[EUR][1000 genomes]
rs917077	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887970	chr7:39587912-39688152	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39645200-39661600	Weak transcription	A549	lung
2	chr7:39648800-39656000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:39649400-39654600	Weak transcription	Pancreas	Pancrea
4	chr7:39649600-39655400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:39649600-39655600	Weak transcription	HSMMtube	muscle
6	chr7:39649800-39655000	Weak transcription	Hela-S3	cervix
7	chr7:39649800-39655200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:39649800-39655200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:39649800-39655600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:39650000-39654800	Weak transcription	Stomach Mucosa	stomach
11	chr7:39650000-39655000	Weak transcription	NHLF	lung
12	chr7:39650200-39655400	Weak transcription	HMEC	breast
13	chr7:39651800-39657000	Enhancers	HUVEC	blood vessel
14	chr7:39652400-39656600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:39652400-39656800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:39653600-39655400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:39653800-39655000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:39653800-39655000	Weak transcription	NH-A	brain
19	chr7:39653800-39655000	Weak transcription	NHDF-Ad	bronchial
20	chr7:39653800-39655000	Weak transcription	Osteobl	bone
21	chr7:39653800-39655400	Weak transcription	NHEK	skin
22	chr7:39654000-39655400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:39654000-39655400	Weak transcription	HSMM	muscle
24	chr7:39654200-39656400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:39654400-39654800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr7:39654400-39654800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:39654400-39654800	Weak transcription	K562	blood

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