Variant report

Variant	rs6463432
Chromosome Location	chr7:47716656-47716657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10046555	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10156204	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536185	0.80[AFR][1000 genomes]
rs4367445	0.81[EUR][1000 genomes]
rs6463430	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6975552	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv888003	chr7:47694270-47907214	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1024392	chr7:47707023-47758976	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1018608	chr7:47708525-47831535	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1024027	chr7:47709936-47743485	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1022906	chr7:47709936-47831535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv1028355	chr7:47715107-47758976	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47706000-47721600	Enhancers	Placenta	Placenta
2	chr7:47709600-47717000	Weak transcription	HMEC	breast
3	chr7:47711000-47717800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:47711000-47718000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:47711800-47716800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:47712200-47717600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:47712400-47717000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr7:47713000-47717600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:47713200-47717600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:47713200-47718000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:47713200-47718000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:47713200-47720600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:47713400-47718000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:47715800-47718000	Enhancers	Hela-S3	cervix
15	chr7:47716000-47718000	Enhancers	HepG2	liver
16	chr7:47716200-47717400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
17	chr7:47716400-47716800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr7:47716400-47717200	ZNF genes & repeats	A549	lung
19	chr7:47716400-47717400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
20	chr7:47716400-47719000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr7:47716400-47719000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr7:47716600-47718400	Enhancers	Primary monocytes fromperipheralblood	blood

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