Variant report

Variant	rs6463434
Chromosome Location	chr7:47764204-47764205
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:47758562..47761407-chr7:47764047..47766786,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10240866	0.89[ASN][1000 genomes]
rs10248639	0.87[ASN][1000 genomes]
rs10258656	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11761091	0.81[ASN][1000 genomes]
rs12702370	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12702373	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12702375	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17659292	0.81[ASN][1000 genomes]
rs4724614	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59467796	0.81[ASN][1000 genomes]
rs6942837	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6959318	0.87[ASN][1000 genomes]
rs6959690	0.91[ASN][1000 genomes]
rs7795629	0.83[ASN][1000 genomes]
rs896827	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv888003	chr7:47694270-47907214	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1018608	chr7:47708525-47831535	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1022906	chr7:47709936-47831535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1015163	chr7:47734913-47832389	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv538831	chr7:47734913-47832389	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47759600-47767000	Enhancers	Primary B cells from peripheral blood	blood
2	chr7:47760800-47764800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:47761000-47765000	Weak transcription	GM12878-XiMat	blood
4	chr7:47762600-47765200	Enhancers	Placenta Amnion	Placenta Amnion
5	chr7:47763000-47766200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:47763400-47766000	Enhancers	Primary B cells from cord blood	blood
7	chr7:47763600-47765000	Enhancers	Fetal Muscle Trunk	muscle
8	chr7:47763600-47765400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:47763600-47765400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:47763800-47764600	Enhancers	NH-A	brain
11	chr7:47763800-47764800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:47763800-47765000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr7:47763800-47765000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:47763800-47765000	Enhancers	Fetal Muscle Leg	muscle
15	chr7:47763800-47765000	Enhancers	Placenta	Placenta
16	chr7:47763800-47765000	Enhancers	HSMMtube	muscle
17	chr7:47763800-47765200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr7:47763800-47765200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:47763800-47765200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr7:47763800-47765200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr7:47763800-47765200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr7:47763800-47765200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr7:47763800-47765200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:47763800-47765200	Enhancers	NHLF	lung
25	chr7:47763800-47765400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr7:47763800-47765400	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr7:47763800-47765400	Enhancers	Hela-S3	cervix
28	chr7:47763800-47765600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr7:47763800-47765800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr7:47763800-47765800	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr7:47763800-47766000	Enhancers	Spleen	Spleen
32	chr7:47763800-47766600	Enhancers	HepG2	liver
33	chr7:47763800-47767000	Enhancers	Fetal Kidney	kidney
34	chr7:47764000-47764400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr7:47764000-47764600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr7:47764000-47764600	Enhancers	Fetal Lung	lung
37	chr7:47764000-47764800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr7:47764000-47765000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr7:47764000-47765000	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr7:47764000-47765000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr7:47764000-47765000	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr7:47764000-47765200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:47764000-47765200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr7:47764000-47765200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr7:47764000-47765200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr7:47764000-47765200	Enhancers	HMEC	breast
47	chr7:47764000-47765200	Enhancers	HSMM	muscle
48	chr7:47764000-47765400	Enhancers	HUVEC	blood vessel
49	chr7:47764000-47765600	Enhancers	Stomach Mucosa	stomach
50	chr7:47764000-47766000	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links