Variant report

Variant	rs6463659
Chromosome Location	chr7:7251897-7251898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs2347890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2347891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4481494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57381723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58687412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59076744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60143764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60600046	1.00[EUR][1000 genomes]
rs61081594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61498285	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6651060	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6942604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6955953	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6956105	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6956604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6958894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6962619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6969492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6969625	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6971061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6972996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6973022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6975955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6976921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6977400	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6977530	1.00[AMR][1000 genomes]
rs6977700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7786284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7787436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7790518	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7795279	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7799430	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7803063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7806755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7807184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7810255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7812145	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015277	chr7:6705439-7303195	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1023133	chr7:6854098-7516700	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv869091	chr7:6927461-7567820	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv949293	chr7:6990891-7711883	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
5	nsv464300	chr7:7040176-7368699	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv606033	chr7:7040176-7368699	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	nsv1016369	chr7:7053923-7375567	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
8	nsv1023788	chr7:7053923-7407783	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	nsv538720	chr7:7053923-7407783	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
10	nsv1032813	chr7:7053923-7497484	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
11	nsv1030246	chr7:7053923-7569633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
12	nsv1019498	chr7:7053923-7668373	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
13	nsv538721	chr7:7053923-7668373	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
14	nsv1032974	chr7:7145831-7393218	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
15	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
16	nsv508445	chr7:7190518-7261098	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
17	esv2758102	chr7:7209911-7493901	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
18	esv2759505	chr7:7209911-7493901	Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7223800-7279600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:7241200-7254400	Weak transcription	Aorta	Aorta
3	chr7:7241400-7254400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:7241600-7257000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:7241600-7263000	Weak transcription	Right Atrium	heart
6	chr7:7241600-7273400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:7241800-7252200	Weak transcription	Small Intestine	intestine
8	chr7:7241800-7253800	Weak transcription	Placenta	Placenta
9	chr7:7241800-7254400	Weak transcription	Thymus	Thymus
10	chr7:7242000-7254400	Weak transcription	Esophagus	oesophagus
11	chr7:7242000-7254400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr7:7242000-7261200	Weak transcription	Stomach Mucosa	stomach
13	chr7:7242000-7261400	Weak transcription	Right Ventricle	heart
14	chr7:7242200-7260400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr7:7243000-7252200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:7243800-7254200	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr7:7244000-7254400	Weak transcription	Liver	Liver
18	chr7:7244200-7256400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr7:7244600-7252000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:7244600-7254200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr7:7244800-7252600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:7245000-7254200	Weak transcription	Dnd41	blood
23	chr7:7245600-7252200	Weak transcription	Primary T cells from cord blood	blood
24	chr7:7246200-7255800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr7:7246600-7260400	Weak transcription	NHDF-Ad	bronchial
26	chr7:7247200-7253000	Weak transcription	Osteobl	bone
27	chr7:7247600-7252200	Weak transcription	Fetal Intestine Large	intestine
28	chr7:7247600-7275000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr7:7247800-7254400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr7:7247800-7255600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr7:7247800-7267400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr7:7248000-7254400	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr7:7248400-7254200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr7:7248400-7254200	Weak transcription	Fetal Muscle Leg	muscle
35	chr7:7248600-7254200	Weak transcription	GM12878-XiMat	blood
36	chr7:7248600-7254200	Weak transcription	NHEK	skin
37	chr7:7248600-7257200	Weak transcription	HMEC	breast
38	chr7:7248600-7261400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr7:7248600-7263200	Weak transcription	Gastric	stomach
40	chr7:7248800-7253000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr7:7249000-7254800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr7:7249200-7252000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr7:7249200-7253400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr7:7249200-7255600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr7:7249400-7254200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr7:7249400-7254400	Weak transcription	Ovary	ovary
47	chr7:7249400-7254400	Weak transcription	K562	blood
48	chr7:7249600-7255000	Weak transcription	Fetal Thymus	thymus
49	chr7:7250000-7252000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr7:7250000-7252000	Weak transcription	Brain Anterior Caudate	brain

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