Variant report

Variant	rs6463754
Chromosome Location	chr7:8101664-8101665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:8100196..8102661-chr7:8110334..8112577,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10253260	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10257285	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10265283	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10272512	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2159510	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2191318	0.83[ASN][1000 genomes]
rs28177	0.83[AMR][1000 genomes]
rs35953256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs37984	0.83[AMR][1000 genomes]
rs37985	0.83[AMR][1000 genomes]
rs37990	0.82[AMR][1000 genomes]
rs37991	0.87[AMR][1000 genomes]
rs38005	0.88[AMR][1000 genomes]
rs4725058	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4725063	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4725066	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4725069	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6463755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6974264	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6975078	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6975913	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6977376	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7777337	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7795506	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7798367	0.88[AMR][1000 genomes]
rs7806440	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs929509	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv917172	chr7:7854632-8807385	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv519058	chr7:8094604-8115794	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1020686	chr7:8095118-8311985	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv538723	chr7:8095118-8311985	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6463754	GLCCI1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:8047600-8108200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:8065000-8108600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:8066400-8127600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:8066600-8126000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr7:8066800-8108600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:8067000-8135400	Weak transcription	Pancreas	Pancrea
7	chr7:8075000-8108600	Weak transcription	Psoas Muscle	Psoas
8	chr7:8075000-8125800	Weak transcription	Lung	lung
9	chr7:8075000-8126800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:8075600-8104400	Weak transcription	HMEC	breast
11	chr7:8075600-8105000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:8075600-8113000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:8075600-8131800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr7:8076000-8111800	Weak transcription	Fetal Brain Male	brain
15	chr7:8076000-8124200	Weak transcription	Fetal Kidney	kidney
16	chr7:8076200-8102200	Weak transcription	Fetal Brain Female	brain
17	chr7:8076200-8108400	Weak transcription	Brain Angular Gyrus	brain
18	chr7:8077200-8103200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:8077200-8106800	Weak transcription	Fetal Heart	heart
20	chr7:8084400-8103200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:8085200-8109000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:8085200-8128400	Weak transcription	Small Intestine	intestine
23	chr7:8088600-8104400	Weak transcription	NH-A	brain
24	chr7:8088600-8108400	Weak transcription	Brain Substantia Nigra	brain
25	chr7:8088600-8108600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr7:8090400-8103200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr7:8091400-8105000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr7:8091400-8127800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr7:8091800-8105000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr7:8092000-8103200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr7:8092000-8105000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr7:8092000-8108600	Weak transcription	Right Ventricle	heart
33	chr7:8092400-8108600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr7:8092600-8108600	Weak transcription	Right Atrium	heart
35	chr7:8094000-8127800	Weak transcription	HSMM	muscle
36	chr7:8094400-8102200	Strong transcription	Dnd41	blood
37	chr7:8094400-8102800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr7:8094600-8102600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr7:8094800-8102000	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr7:8095000-8102000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr7:8095000-8102200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr7:8095000-8103200	Strong transcription	Fetal Thymus	thymus
43	chr7:8095200-8108600	Weak transcription	Left Ventricle	heart
44	chr7:8095200-8125800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr7:8095400-8129600	Weak transcription	Gastric	stomach
46	chr7:8095600-8102200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr7:8095600-8102200	Weak transcription	Ovary	ovary
48	chr7:8095600-8108600	Weak transcription	Fetal Muscle Trunk	muscle
49	chr7:8095800-8108600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr7:8096000-8102200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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