Variant report

Variant	rs6464278
Chromosome Location	chr7:140749794-140749795
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11769174	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12672764	0.82[AMR][1000 genomes]
rs1860752	0.89[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes]
rs4726263	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs491554	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs498933	0.95[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs536809	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs553046	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6464330	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs6944492	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6960603	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6962233	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs6967482	0.88[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap]
rs722219	0.89[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7794979	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7806026	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs7810541	0.91[CEU][hapmap]
rs9886312	0.91[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6464278	TMEM178B	cis	Esophagus Mucosa	GTEx
rs6464278	MRPS33	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140746600-140753400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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