Variant report

Variant	rs6464313
Chromosome Location	chr7:152855865-152855866
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10230744	0.82[ASN][1000 genomes]
rs10241760	0.84[ASN][1000 genomes]
rs10245112	0.84[ASN][1000 genomes]
rs10251999	0.82[ASN][1000 genomes]
rs10252792	0.82[ASN][1000 genomes]
rs10252850	0.81[ASN][1000 genomes]
rs10252984	0.82[ASN][1000 genomes]
rs10267609	0.82[ASN][1000 genomes]
rs10267739	0.82[ASN][1000 genomes]
rs10275739	0.82[ASN][1000 genomes]
rs10277262	0.82[ASN][1000 genomes]
rs10279034	0.82[ASN][1000 genomes]
rs10281241	0.82[ASN][1000 genomes]
rs10281242	0.82[ASN][1000 genomes]
rs10281358	0.82[ASN][1000 genomes]
rs11972673	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333398	0.82[ASN][1000 genomes]
rs12333400	0.82[ASN][1000 genomes]
rs2311852	0.84[ASN][1000 genomes]
rs2871888	0.84[ASN][1000 genomes]
rs28761235	0.82[ASN][1000 genomes]
rs28792774	0.82[ASN][1000 genomes]
rs28812189	0.82[ASN][1000 genomes]
rs28839896	0.82[ASN][1000 genomes]
rs28848253	0.82[ASN][1000 genomes]
rs28858768	0.82[ASN][1000 genomes]
rs28892941	0.82[ASN][1000 genomes]
rs4286860	0.82[ASN][1000 genomes]
rs4286861	0.82[ASN][1000 genomes]
rs4346923	0.95[JPT][hapmap];0.83[TSI][hapmap];0.85[ASN][1000 genomes]
rs4346924	0.95[JPT][hapmap];0.83[TSI][hapmap];0.85[ASN][1000 genomes]
rs4391337	0.82[ASN][1000 genomes]
rs4463337	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4530950	0.82[ASN][1000 genomes]
rs4565376	0.82[ASN][1000 genomes]
rs4626511	0.82[ASN][1000 genomes]
rs4726262	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59234135	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027100	chr7:152294734-152935140	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv532221	chr7:152371297-152884547	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv868873	chr7:152371297-152900113	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv532222	chr7:152504090-153450290	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv831194	chr7:152762400-152963937	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3384970	chr7:152789043-152858746	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6464313	VCAM1	trans	brain	seeQTL
rs6464313	GBP4	trans	brain	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:152854600-152856000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr7:152854600-152856000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr7:152855600-152856200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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