Variant report

Variant	rs6464696
Chromosome Location	chr7:140042556-140042557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs67504872	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6974016	0.87[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9640226	0.82[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6464696	DENND2A	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140024000-140048800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:140026200-140048600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr7:140026600-140051600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:140026600-140060600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:140029800-140042800	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:140032200-140042600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:140032800-140043000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:140033400-140043200	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr7:140033400-140048400	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr7:140033600-140096000	Weak transcription	Stomach Mucosa	stomach
11	chr7:140034800-140047600	Weak transcription	GM12878-XiMat	blood
12	chr7:140034800-140085600	Weak transcription	Psoas Muscle	Psoas
13	chr7:140035000-140045200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:140035000-140052400	Weak transcription	Fetal Kidney	kidney
15	chr7:140035000-140074200	Weak transcription	Right Atrium	heart
16	chr7:140035200-140042600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:140035200-140042600	Weak transcription	Right Ventricle	heart
18	chr7:140035200-140044800	Weak transcription	Brain Angular Gyrus	brain
19	chr7:140035200-140044800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr7:140035200-140048400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr7:140035200-140058200	Weak transcription	Small Intestine	intestine
22	chr7:140035200-140060600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr7:140035400-140042600	Weak transcription	Aorta	Aorta
24	chr7:140035400-140044800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr7:140035400-140048600	Weak transcription	HSMM	muscle
26	chr7:140035600-140047400	Weak transcription	Fetal Heart	heart
27	chr7:140035800-140045000	Weak transcription	NHEK	skin
28	chr7:140035800-140048600	Weak transcription	Brain Substantia Nigra	brain
29	chr7:140036000-140042600	Weak transcription	HUVEC	blood vessel
30	chr7:140036000-140044600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr7:140036000-140044800	Weak transcription	Brain Anterior Caudate	brain
32	chr7:140036200-140042600	Weak transcription	Pancreas	Pancrea
33	chr7:140036200-140044600	Weak transcription	NH-A	brain
34	chr7:140036200-140048400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr7:140036400-140044800	Weak transcription	Primary B cells from peripheral blood	blood
36	chr7:140037400-140042600	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr7:140038000-140049000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr7:140038000-140060200	Strong transcription	Primary T cells from cord blood	blood
39	chr7:140038000-140061000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:140038200-140043600	Strong transcription	Fetal Muscle Leg	muscle
41	chr7:140038200-140044000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr7:140038200-140061200	Strong transcription	Fetal Stomach	stomach
43	chr7:140038600-140055600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr7:140038600-140056800	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr7:140038600-140060400	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr7:140038800-140043400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr7:140038800-140048000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr7:140038800-140048200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr7:140039000-140055800	Strong transcription	Liver	Liver
50	chr7:140039200-140043200	Strong transcription	Fetal Lung	lung

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