Variant report

Variant	rs6464782
Chromosome Location	chr7:146769438-146769439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1014686	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10231780	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10256502	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10256846	0.81[EUR][1000 genomes]
rs10260427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10261458	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10268697	0.89[EUR][1000 genomes]
rs10272523	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10275671	0.93[ASN][1000 genomes]
rs10952669	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12666908	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1548743	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1860478	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1860479	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2191272	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2191273	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6464781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6464783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs740810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs740811	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7777531	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7802708	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7809722	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9640233	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9640234	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021251	chr7:146522341-146802125	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1029646	chr7:146702080-146788213	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1015266	chr7:146707047-146788213	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2761380	chr7:146707059-146788225	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1034510	chr7:146719973-146848581	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
8	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
9	nsv817278	chr7:146741106-146771077	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv933740	chr7:146762650-146783928	Weak transcription Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
11	nsv933628	chr7:146762650-146794398	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146767800-146769600	Enhancers	Fetal Kidney	kidney
2	chr7:146769200-146780200	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links