Variant report

Variant	rs6464818
Chromosome Location	chr7:140219044-140219045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140216375..140219201-chr7:140345522..140347108,2	MCF-7	breast:
2	chr7:140217452..140219514-chr7:140224086..140226868,2	K562	blood:
3	chr7:140175661..140178823-chr7:140215593..140219447,3	K562	blood:

Variant related genes	Relation type
ENSG00000133606	Chromatin interaction
ENSG00000240173	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12538386	0.88[CEU][hapmap]
rs6464833	0.82[AMR][1000 genomes]
rs6943477	0.87[EUR][1000 genomes]
rs6980049	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803443	chr7:140146694-140263109	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv2761112	chr7:140191538-140234571	Strong transcription Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv464735	chr7:140195463-140233585	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv608501	chr7:140195463-140233585	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv1033685	chr7:140197079-140224303	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv1015856	chr7:140197079-140235677	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
7	nsv1018535	chr7:140198540-140224303	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
8	nsv1019815	chr7:140206590-140235677	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	nsv971147	chr7:140212384-140219526	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv1802929	chr7:140212566-140285491	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140205800-140225400	Weak transcription	Spleen	Spleen
2	chr7:140206800-140233200	Weak transcription	Brain Angular Gyrus	brain
3	chr7:140207000-140241000	Weak transcription	Fetal Brain Male	brain
4	chr7:140207200-140219200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:140208600-140219200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:140210800-140220000	Weak transcription	Brain Anterior Caudate	brain
7	chr7:140211600-140225600	Weak transcription	NH-A	brain
8	chr7:140212600-140220800	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:140212600-140221200	Weak transcription	Left Ventricle	heart
10	chr7:140212600-140225400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:140212600-140225400	Weak transcription	Esophagus	oesophagus
12	chr7:140212600-140225800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:140212600-140225800	Weak transcription	Right Atrium	heart
14	chr7:140212600-140227000	Weak transcription	Lung	lung
15	chr7:140212800-140224000	Weak transcription	Liver	Liver
16	chr7:140214600-140225400	Weak transcription	Gastric	stomach
17	chr7:140216600-140227600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:140216800-140229000	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr7:140216800-140230600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr7:140217200-140223400	Strong transcription	Fetal Intestine Small	intestine
21	chr7:140217200-140224000	Strong transcription	Fetal Brain Female	brain
22	chr7:140217400-140219400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:140217400-140219400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:140217400-140222000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:140217600-140219200	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr7:140217600-140219200	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr7:140217600-140219200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr7:140217800-140219400	Genic enhancers	Fetal Stomach	stomach
29	chr7:140217800-140219600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr7:140217800-140220400	Genic enhancers	Fetal Muscle Trunk	muscle
31	chr7:140218000-140219200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr7:140218000-140219200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr7:140218000-140219400	Enhancers	H1 Cell Line	embryonic stem cell
34	chr7:140218000-140219400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr7:140218000-140219400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr7:140218000-140219600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:140218000-140219600	Enhancers	Adipose Nuclei	Adipose
38	chr7:140218000-140219600	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr7:140218000-140219600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
40	chr7:140218000-140219600	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr7:140218000-140219800	Genic enhancers	Fetal Muscle Leg	muscle
42	chr7:140218000-140220000	Enhancers	Duodenum Mucosa	Duodenum
43	chr7:140218000-140223400	Weak transcription	Fetal Intestine Large	intestine
44	chr7:140218200-140219600	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr7:140218200-140221200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr7:140218200-140221600	Weak transcription	Right Ventricle	heart
47	chr7:140218200-140223800	Weak transcription	Primary B cells from peripheral blood	blood
48	chr7:140218200-140224800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr7:140218200-140225400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr7:140218200-140225600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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