Variant report

Variant	rs6465826
Chromosome Location	chr7:101375259-101375260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101374945..101377506-chr7:101385778..101388397,3	K562	blood:
2	chr7:101374945..101377549-chr7:101385778..101388199,3	K562	blood:
3	chr7:101365013..101367690-chr7:101372321..101375439,3	MCF-7	breast:
4	chr7:101374726..101377337-chr7:101458849..101460414,2	MCF-7	breast:
5	chr7:101369100..101373067-chr7:101374919..101378261,3	K562	blood:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1880345	0.93[ASN][1000 genomes]
rs1965520	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4449725	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60457263	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61396041	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62463678	0.80[ASN][1000 genomes]
rs6465827	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6948235	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6948393	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6964718	0.96[ASN][1000 genomes]
rs6964868	0.96[ASN][1000 genomes]
rs73177866	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7792422	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7796020	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7796580	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7811251	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1018544	chr7:101225639-101424889	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv539045	chr7:101225639-101424889	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv482758	chr7:101231458-101395219	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv831079	chr7:101273495-101466776	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv1021797	chr7:101342353-101466957	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv539046	chr7:101342353-101466957	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
8	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
9	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101332000-101376800	Weak transcription	Right Atrium	heart
2	chr7:101364800-101382400	Weak transcription	Thymus	Thymus
3	chr7:101369600-101377400	Weak transcription	Spleen	Spleen
4	chr7:101371600-101376600	Weak transcription	GM12878-XiMat	blood
5	chr7:101371600-101376800	Weak transcription	Primary B cells from cord blood	blood
6	chr7:101372400-101376600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr7:101372400-101376600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:101372400-101376800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr7:101372800-101375400	Enhancers	Hela-S3	cervix
10	chr7:101372800-101376200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:101373000-101376800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:101373000-101376800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:101373200-101376800	Weak transcription	Lung	lung
14	chr7:101373400-101376000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr7:101373400-101376600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:101373400-101376800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr7:101373400-101376800	Weak transcription	Colonic Mucosa	Colon
18	chr7:101373400-101376800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr7:101373600-101376400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr7:101373600-101376800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr7:101373600-101376800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr7:101373600-101376800	Weak transcription	Fetal Intestine Small	intestine
23	chr7:101373600-101376800	Weak transcription	Placenta	Placenta
24	chr7:101373600-101376800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr7:101373600-101376800	Weak transcription	HSMM	muscle
26	chr7:101373600-101376800	Weak transcription	HSMMtube	muscle
27	chr7:101373600-101376800	Weak transcription	K562	blood
28	chr7:101373600-101376800	Weak transcription	Osteobl	bone
29	chr7:101373800-101376800	Weak transcription	Stomach Mucosa	stomach
30	chr7:101374000-101375400	Enhancers	H1 Cell Line	embryonic stem cell
31	chr7:101374200-101375600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr7:101374200-101376800	Weak transcription	Fetal Intestine Large	intestine
33	chr7:101374400-101382800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr7:101374600-101375400	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr7:101374800-101375400	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr7:101374800-101375400	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr7:101374800-101375400	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr7:101374800-101375600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr7:101374800-101375600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr7:101375000-101375400	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr7:101375200-101375400	Enhancers	HUES48 Cell Line	embryonic stem cell

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