Variant report

Variant	rs6466288
Chromosome Location	chr7:109209215-109209216
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1404133	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1474356	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1524270	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1524272	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1721897	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1721902	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1721977	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1815091	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2091134	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3938257	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7779039	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7804606	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs940363	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs940364	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023379	chr7:109003574-109355234	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv608079	chr7:109098364-109862289	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1020761	chr7:109208187-109275700	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109188000-109211000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:109198200-109211200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:109198600-109211400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:109200200-109210600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:109200200-109211400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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