Variant report

Variant	rs6466391
Chromosome Location	chr7:111540832-111540833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:111538964..111541049-chr7:111545788..111547924,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10224457	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10236850	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10249065	0.82[EUR][1000 genomes]
rs10255299	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10269918	0.81[EUR][1000 genomes]
rs13227802	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28657710	0.98[EUR][1000 genomes]
rs59559298	0.80[EUR][1000 genomes]
rs6971767	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608196	chr7:111073710-111794368	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1021527	chr7:111194596-111851619	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv539086	chr7:111194596-111851619	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1028740	chr7:111227747-111679401	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1015267	chr7:111303294-111714771	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539087	chr7:111303294-111714771	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv539088	chr7:111333899-111722341	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv531435	chr7:111333900-111926292	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv491934	chr7:111333900-111975504	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
11	nsv533924	chr7:111529515-111784369	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111481000-111554000	Weak transcription	Placenta	Placenta
2	chr7:111500600-111560400	Weak transcription	Pancreas	Pancrea
3	chr7:111506000-111543200	Weak transcription	HMEC	breast
4	chr7:111514400-111556400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:111514600-111546600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:111514800-111571000	Weak transcription	NHLF	lung
7	chr7:111515000-111554200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:111515000-111554200	Weak transcription	Esophagus	oesophagus
9	chr7:111519200-111558200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:111521400-111545400	Weak transcription	Fetal Brain Male	brain
11	chr7:111521800-111578000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:111523800-111541400	Weak transcription	Small Intestine	intestine
13	chr7:111526800-111555600	Weak transcription	Spleen	Spleen
14	chr7:111527000-111545200	Weak transcription	Gastric	stomach
15	chr7:111527600-111551000	Weak transcription	Brain Angular Gyrus	brain
16	chr7:111531400-111541800	Strong transcription	HUVEC	blood vessel
17	chr7:111532600-111545000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr7:111532800-111541200	Strong transcription	Liver	Liver
19	chr7:111533400-111543800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:111534200-111554000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:111534400-111551000	Weak transcription	HSMMtube	muscle
22	chr7:111535000-111554000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:111535000-111556400	Weak transcription	Aorta	Aorta
24	chr7:111535000-111559600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr7:111535800-111542400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr7:111536200-111541000	Strong transcription	Fetal Lung	lung
27	chr7:111536200-111541200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:111536200-111541200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr7:111536400-111557600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr7:111536800-111551600	Weak transcription	Right Atrium	heart
31	chr7:111537200-111541000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr7:111537200-111541400	Strong transcription	Ovary	ovary
33	chr7:111537600-111541000	Strong transcription	Brain Hippocampus Middle	brain
34	chr7:111537600-111541000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr7:111537800-111541200	Strong transcription	Psoas Muscle	Psoas
36	chr7:111538000-111541000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:111538000-111541400	Strong transcription	Left Ventricle	heart
38	chr7:111538000-111541800	Strong transcription	Brain Anterior Caudate	brain
39	chr7:111539000-111541000	Strong transcription	Stomach Smooth Muscle	stomach
40	chr7:111539200-111541600	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr7:111539200-111541600	Weak transcription	Hela-S3	cervix
42	chr7:111539400-111541000	Strong transcription	Lung	lung
43	chr7:111539400-111541200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr7:111539600-111541000	Strong transcription	Right Ventricle	heart
45	chr7:111539600-111541400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:111539800-111543600	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr7:111540000-111541000	Strong transcription	Fetal Brain Female	brain
48	chr7:111540000-111541000	Strong transcription	Fetal Stomach	stomach
49	chr7:111540000-111541000	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr7:111540000-111541400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links