Variant report

Variant	rs6466405
Chromosome Location	chr7:111895314-111895315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:111893104..111896006-chr7:111897098..111899676,2	MCF-7	breast:
2	chr7:111891287..111893873-chr7:111893938..111895476,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs4730522	1.00[YRI][hapmap]
rs58457277	0.87[AFR][1000 genomes]
rs6972306	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs6974029	0.96[AFR][1000 genomes]
rs73424456	0.91[AFR][1000 genomes]
rs73426417	0.91[AFR][1000 genomes]
rs73426460	0.87[AFR][1000 genomes]
rs73426479	0.87[AFR][1000 genomes]
rs7804274	0.87[AFR][1000 genomes]
rs9656191	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531435	chr7:111333900-111926292	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv491934	chr7:111333900-111975504	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
5	esv1802305	chr7:111891204-111896878	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111863800-111900200	Weak transcription	Left Ventricle	heart
2	chr7:111879400-111903000	Weak transcription	Psoas Muscle	Psoas
3	chr7:111879800-111906200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:111881800-111906400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:111883400-111897000	Weak transcription	HepG2	liver
6	chr7:111890400-111906200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr7:111890800-111896000	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr7:111890800-111896200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:111891000-111895400	Weak transcription	Small Intestine	intestine
10	chr7:111891000-111896000	Enhancers	Brain Substantia Nigra	brain
11	chr7:111891200-111896000	Enhancers	Brain Cingulate Gyrus	brain
12	chr7:111891400-111895800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:111891400-111896000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr7:111892200-111895400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr7:111892200-111896000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:111892600-111896000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr7:111892600-111896200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr7:111892600-111901200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:111893000-111896200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr7:111893200-111896000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr7:111893200-111896000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr7:111893200-111896400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr7:111893200-111926000	Weak transcription	Primary T cells from cord blood	blood
24	chr7:111893400-111896200	Enhancers	Dnd41	blood
25	chr7:111894000-111895800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr7:111894200-111896000	Enhancers	H9 Cell Line	embryonic stem cell
27	chr7:111894200-111896200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr7:111894200-111901000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr7:111894400-111896000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr7:111894400-111896200	Enhancers	Pancreas	Pancrea
31	chr7:111894600-111896800	Weak transcription	A549	lung
32	chr7:111894600-111900800	Weak transcription	Fetal Kidney	kidney
33	chr7:111894600-111903000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr7:111894600-111905000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr7:111894800-111895600	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr7:111894800-111895600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr7:111894800-111895800	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr7:111894800-111895800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr7:111894800-111896000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr7:111895000-111895400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr7:111895000-111895800	Enhancers	Pancreatic Islets	Pancreatic Islet
42	chr7:111895000-111896000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr7:111895000-111897400	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr7:111895000-111903200	Weak transcription	Gastric	stomach
45	chr7:111895000-111903400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr7:111895200-111896000	Enhancers	Brain Anterior Caudate	brain

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