Variant report

Variant	rs6466808
Chromosome Location	chr7:121587980-121587981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1019221	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10256876	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10278079	1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10280935	0.82[ASN][1000 genomes]
rs1206515	0.86[ASN][1000 genomes]
rs28660593	0.98[ASN][1000 genomes]
rs3779378	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6466810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6948149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955395	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6974359	0.98[ASN][1000 genomes]
rs7790815	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7791779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7808921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121571600-121597400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:121571800-121601200	Weak transcription	Esophagus	oesophagus
3	chr7:121582200-121590200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:121582200-121591600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:121582200-121595000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:121582400-121591800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:121582600-121617600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:121582800-121590200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:121583000-121588200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:121583000-121592400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:121583000-121592600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:121585800-121589000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:121586000-121590600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:121586000-121591600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr7:121586200-121590600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:121586200-121601200	Weak transcription	Fetal Brain Female	brain
17	chr7:121586400-121591800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:121586400-121592800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr7:121586400-121593800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr7:121586600-121588000	Enhancers	NHEK	skin
21	chr7:121587400-121588000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:121587600-121589400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
23	chr7:121587600-121593600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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