Variant report

Variant	rs6467114
Chromosome Location	chr7:126865441-126865442
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10267465	0.85[CEU][hapmap]
rs13227115	0.95[CEU][hapmap]
rs17862317	0.85[CHB][hapmap]
rs17863247	0.93[CHD][hapmap]
rs17864157	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2237798	0.95[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.92[MEX][hapmap]
rs2237806	0.81[CHD][hapmap]
rs2237807	0.81[CHD][hapmap]
rs2299555	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1819919	chr7:126850298-126888714	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6467114	ZNF800	cis	parietal	SCAN
rs6467114	ZNF800	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126864400-126866600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:126864400-126866800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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