Variant report

Variant	rs6468316
Chromosome Location	chr8:35237788-35237789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:35236339..35238040-chr8:35238233..35240737,2	K562	blood:

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10086433	0.92[ASN][1000 genomes]
rs10091291	0.89[ASN][1000 genomes]
rs10101937	0.89[ASN][1000 genomes]
rs10104660	0.90[ASN][1000 genomes]
rs10108964	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10110454	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10113220	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10503979	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10954985	0.92[ASN][1000 genomes]
rs10954986	0.92[ASN][1000 genomes]
rs10954987	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11984839	0.90[ASN][1000 genomes]
rs11991431	0.87[ASN][1000 genomes]
rs11991965	0.92[ASN][1000 genomes]
rs11992772	0.92[ASN][1000 genomes]
rs11996793	0.91[ASN][1000 genomes]
rs11997743	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12056409	0.92[ASN][1000 genomes]
rs12541372	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12542495	0.92[ASN][1000 genomes]
rs12550658	0.92[ASN][1000 genomes]
rs12679477	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12680114	0.92[ASN][1000 genomes]
rs13250741	0.84[ASN][1000 genomes]
rs13266519	0.92[ASN][1000 genomes]
rs13280010	0.92[ASN][1000 genomes]
rs13282296	0.84[ASN][1000 genomes]
rs13282746	0.91[ASN][1000 genomes]
rs1358563	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1358564	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1406376	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1528704	0.91[ASN][1000 genomes]
rs1528705	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1528708	0.92[ASN][1000 genomes]
rs1528709	0.94[ASN][1000 genomes]
rs1528710	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1528716	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1528717	0.92[ASN][1000 genomes]
rs1528718	0.92[ASN][1000 genomes]
rs1528719	0.92[ASN][1000 genomes]
rs1528722	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1534584	0.92[ASN][1000 genomes]
rs1554864	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1590092	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1590093	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1609345	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16883904	0.92[ASN][1000 genomes]
rs1919336	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1919337	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1919344	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1919346	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1919348	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1919349	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1919355	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1980396	0.92[ASN][1000 genomes]
rs2204719	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2405735	0.92[ASN][1000 genomes]
rs28388271	0.92[ASN][1000 genomes]
rs28395502	0.92[ASN][1000 genomes]
rs28412900	0.92[ASN][1000 genomes]
rs2950895	0.85[ASN][1000 genomes]
rs2950897	0.89[ASN][1000 genomes]
rs2950898	0.89[ASN][1000 genomes]
rs2950901	0.90[ASN][1000 genomes]
rs2950924	0.90[ASN][1000 genomes]
rs2980378	0.92[ASN][1000 genomes]
rs2980391	0.92[ASN][1000 genomes]
rs2980406	0.90[ASN][1000 genomes]
rs2980408	0.89[ASN][1000 genomes]
rs3108619	0.90[ASN][1000 genomes]
rs35169691	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35365523	0.92[ASN][1000 genomes]
rs35985268	0.90[ASN][1000 genomes]
rs4360290	0.92[ASN][1000 genomes]
rs4452796	0.92[ASN][1000 genomes]
rs4492371	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4540403	0.89[ASN][1000 genomes]
rs4739302	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4739304	0.92[ASN][1000 genomes]
rs4739400	0.85[ASN][1000 genomes]
rs4739402	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4739406	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4739407	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs5000056	0.90[ASN][1000 genomes]
rs58886150	0.91[ASN][1000 genomes]
rs6468317	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6991984	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6992809	0.92[ASN][1000 genomes]
rs6997453	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7006157	0.90[ASN][1000 genomes]
rs7013157	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7817194	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7819547	0.88[ASN][1000 genomes]
rs7824855	0.90[ASN][1000 genomes]
rs7827072	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7827646	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7829022	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7829585	0.92[ASN][1000 genomes]
rs7839131	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs871994	0.92[ASN][1000 genomes]
rs9297236	0.89[ASN][1000 genomes]
rs9297237	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs951515	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv429910	chr8:35021411-35257445	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv890717	chr8:35184361-35315188	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1830629	chr8:35218820-35256073	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35229000-35242000	Weak transcription	Fetal Brain Female	brain
2	chr8:35234800-35238800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:35235600-35239200	Weak transcription	Fetal Heart	heart
4	chr8:35235600-35242000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr8:35236000-35238800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:35236200-35240200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:35236400-35238200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:35236400-35238800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:35236400-35246000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr8:35237200-35238200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:35237200-35238200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr8:35237200-35243600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr8:35237200-35247600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr8:35237400-35238000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr8:35237400-35238000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:35237600-35237800	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast

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