Variant report

Variant	rs6468635
Chromosome Location	chr8:99383449-99383450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99348991..99351548-chr8:99381372..99383684,2	MCF-7	breast:
2	chr8:99375676..99377993-chr8:99381556..99384314,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13262430	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16896921	0.80[CEU][hapmap]
rs28452766	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35961136	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6468634	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7001549	0.81[CEU][hapmap];0.82[CHB][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831406	chr8:99290745-99482076	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv891217	chr8:99346537-99391285	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99377400-99384000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:99377400-99384800	Weak transcription	Right Atrium	heart
3	chr8:99377600-99384200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:99378800-99386000	Enhancers	Fetal Heart	heart
5	chr8:99379000-99386800	Enhancers	Ovary	ovary
6	chr8:99379200-99385000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:99379400-99383600	Enhancers	Fetal Lung	lung
8	chr8:99380600-99383800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:99381000-99384800	Weak transcription	Left Ventricle	heart
10	chr8:99381000-99384800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr8:99381000-99384800	Weak transcription	NHDF-Ad	bronchial
12	chr8:99381000-99385400	Weak transcription	Gastric	stomach
13	chr8:99381200-99384400	Weak transcription	Right Ventricle	heart
14	chr8:99381200-99385600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:99381200-99386400	Weak transcription	Pancreas	Pancrea
16	chr8:99381200-99386600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr8:99381400-99384400	Weak transcription	NHLF	lung
18	chr8:99382000-99384600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr8:99382000-99385000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr8:99382200-99384800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:99382200-99385800	Enhancers	Stomach Smooth Muscle	stomach
22	chr8:99382600-99384200	Weak transcription	Fetal Stomach	stomach
23	chr8:99383000-99385800	Weak transcription	Lung	lung
24	chr8:99383000-99394400	Weak transcription	Osteobl	bone
25	chr8:99383200-99383600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr8:99383200-99384600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr8:99383400-99383800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links