Variant report

Variant	rs6469825
Chromosome Location	chr8:120496968-120496969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1374094	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1599475	0.88[ASN][1000 genomes]
rs17793468	0.88[ASN][1000 genomes]
rs17793498	0.88[ASN][1000 genomes]
rs2326260	0.90[ASN][1000 genomes]
rs2326261	0.90[ASN][1000 genomes]
rs2326262	0.90[ASN][1000 genomes]
rs4292719	0.90[ASN][1000 genomes]
rs4870796	0.90[ASN][1000 genomes]
rs4870797	0.90[ASN][1000 genomes]
rs4870798	0.90[ASN][1000 genomes]
rs4871265	0.90[ASN][1000 genomes]
rs6991181	0.86[ASN][1000 genomes]
rs6996588	0.88[ASN][1000 genomes]
rs7000665	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs7009369	0.89[ASN][1000 genomes]
rs7013085	0.90[ASN][1000 genomes]
rs7013099	0.90[ASN][1000 genomes]
rs7013103	0.90[ASN][1000 genomes]
rs7013650	0.90[ASN][1000 genomes]
rs7013726	0.89[ASN][1000 genomes]
rs7013970	0.89[ASN][1000 genomes]
rs7014095	0.89[ASN][1000 genomes]
rs7014564	0.89[ASN][1000 genomes]
rs7827684	0.90[ASN][1000 genomes]
rs7841822	0.90[JPT][hapmap]
rs7845757	0.83[ASN][1000 genomes]
rs9643134	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1026655	chr8:120282929-120522329	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120496200-120498200	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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