Variant report

Variant	rs6469829
Chromosome Location	chr8:120508152-120508153
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:120492613..120495252-chr8:120506085..120508757,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254037	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10094917	0.84[EUR][1000 genomes]
rs10505364	0.80[EUR][1000 genomes]
rs1348724	0.84[EUR][1000 genomes]
rs1348725	0.84[EUR][1000 genomes]
rs1599475	0.84[EUR][1000 genomes]
rs17793468	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17793498	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1838746	0.84[EUR][1000 genomes]
rs2017336	0.84[EUR][1000 genomes]
rs2326260	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2326261	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2326262	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2875886	0.85[EUR][1000 genomes]
rs2875887	0.84[EUR][1000 genomes]
rs4292719	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4549811	0.84[EUR][1000 genomes]
rs4870796	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4870797	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4870798	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4870800	0.85[EUR][1000 genomes]
rs4871265	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6469828	0.80[EUR][1000 genomes]
rs6983616	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6991181	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6996111	0.81[EUR][1000 genomes]
rs6996588	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7000133	0.81[EUR][1000 genomes]
rs7000665	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7003949	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7009369	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7010158	0.80[EUR][1000 genomes]
rs7013085	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7013099	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7013103	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7013650	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7013726	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7013970	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7014095	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7014564	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7016637	0.84[EUR][1000 genomes]
rs7017947	0.81[EUR][1000 genomes]
rs72686368	0.83[EUR][1000 genomes]
rs7827684	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7844619	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7845757	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9643134	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1026655	chr8:120282929-120522329	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120506800-120508600	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr8:120507400-120508600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:120508000-120509000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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