Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10092516	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10955968	0.83[ASN][1000 genomes]
rs11775222	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1563388	0.82[ASN][1000 genomes]
rs1869831	0.82[ASN][1000 genomes]
rs1993390	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1993391	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2124470	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2219241	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2305609	0.80[ASN][1000 genomes]
rs34829355	0.81[ASN][1000 genomes]
rs57514813	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6469908	0.81[ASN][1000 genomes]
rs6469911	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6469912	0.83[ASN][1000 genomes]
rs6469915	0.83[ASN][1000 genomes]
rs7006048	0.83[ASN][1000 genomes]
rs7010688	0.83[ASN][1000 genomes]
rs7341686	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7817682	0.81[EUR][1000 genomes]
rs7827901	0.86[EUR][1000 genomes]
rs7834446	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7835757	0.82[ASN][1000 genomes]
rs7839121	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv612112	chr8:121234298-121385167	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121284800-121347800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr8:121287400-121322600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr8:121293400-121333200	Weak transcription	Fetal Intestine Large	intestine
4	chr8:121299400-121324400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:121310800-121328200	Weak transcription	Fetal Brain Male	brain
6	chr8:121312000-121323000	Weak transcription	Fetal Muscle Leg	muscle
7	chr8:121313600-121322200	Weak transcription	Aorta	Aorta
8	chr8:121314200-121322600	Weak transcription	Placenta	Placenta
9	chr8:121315200-121325200	Weak transcription	Fetal Stomach	stomach
10	chr8:121315400-121322800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:121316600-121319400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:121316600-121322800	Weak transcription	Ovary	ovary
13	chr8:121316600-121324600	Weak transcription	Fetal Lung	lung

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