Variant report

Variant	rs6470199
Chromosome Location	chr8:124894644-124894645
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10111524	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13272022	0.92[CEU][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes]
rs13273203	1.00[CEU][hapmap];0.90[JPT][hapmap];0.99[EUR][1000 genomes]
rs4242348	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs4370516	1.00[CEU][hapmap];0.86[JPT][hapmap];0.98[EUR][1000 genomes]
rs4388448	0.92[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs4871418	1.00[CEU][hapmap];0.90[JPT][hapmap];0.99[EUR][1000 genomes]
rs6470203	0.99[EUR][1000 genomes]
rs6980985	0.92[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6982799	1.00[CEU][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7817233	0.89[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7823126	0.92[CEU][hapmap];0.80[CHB][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7829766	0.99[EUR][1000 genomes]
rs7831101	0.92[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6374	chr8:124854157-124899409	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124893800-124894800	Enhancers	Adipose Nuclei	Adipose
2	chr8:124894000-124894800	Enhancers	Osteobl	bone
3	chr8:124894600-124894800	Enhancers	Right Atrium	heart
4	chr8:124894600-124895000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:124894600-124895200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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