Variant report

Variant	rs6470681
Chromosome Location	chr8:130027638-130027639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10098250	0.89[EUR][1000 genomes]
rs10956458	0.88[EUR][1000 genomes]
rs11990860	0.86[EUR][1000 genomes]
rs11996876	0.89[EUR][1000 genomes]
rs11997291	0.86[EUR][1000 genomes]
rs12334809	0.86[EUR][1000 genomes]
rs1372441	0.88[EUR][1000 genomes]
rs1372444	0.86[EUR][1000 genomes]
rs1372452	0.86[EUR][1000 genomes]
rs1441988	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2197111	0.86[EUR][1000 genomes]
rs3957251	0.89[EUR][1000 genomes]
rs4354273	0.86[EUR][1000 genomes]
rs4443626	0.86[EUR][1000 genomes]
rs55801260	0.84[EUR][1000 genomes]
rs55836025	0.84[EUR][1000 genomes]
rs55865674	0.86[EUR][1000 genomes]
rs55925307	0.86[EUR][1000 genomes]
rs56000240	0.86[EUR][1000 genomes]
rs56065964	0.84[EUR][1000 genomes]
rs56396127	0.86[EUR][1000 genomes]
rs56853677	0.88[EUR][1000 genomes]
rs57967261	0.86[EUR][1000 genomes]
rs62525662	0.84[EUR][1000 genomes]
rs62525664	0.86[EUR][1000 genomes]
rs62525667	0.86[EUR][1000 genomes]
rs62525668	0.86[EUR][1000 genomes]
rs62525669	0.86[EUR][1000 genomes]
rs62525670	0.85[EUR][1000 genomes]
rs62525671	0.86[EUR][1000 genomes]
rs62525713	0.86[EUR][1000 genomes]
rs62525715	0.86[EUR][1000 genomes]
rs62525716	0.86[EUR][1000 genomes]
rs6470678	0.88[EUR][1000 genomes]
rs6470679	0.88[EUR][1000 genomes]
rs7001446	0.85[EUR][1000 genomes]
rs7018275	0.86[EUR][1000 genomes]
rs7817443	0.86[EUR][1000 genomes]
rs7827793	0.89[EUR][1000 genomes]
rs7833975	0.86[EUR][1000 genomes]
rs7835514	0.89[EUR][1000 genomes]
rs7835741	0.84[EUR][1000 genomes]
rs7844268	0.89[EUR][1000 genomes]
rs920621	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891442	chr8:130016499-130130604	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891444	chr8:130024642-130130604	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv971606	chr8:130025407-130032870	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130019800-130028200	Weak transcription	Dnd41	blood
2	chr8:130025200-130035800	Weak transcription	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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