Variant report

Variant	rs6471522
Chromosome Location	chr8:96202974-96202975
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:96200453..96203080-chr8:96203459..96205990,2	K562	blood:
2	chr8:96197860..96200362-chr8:96201805..96203438,3	MCF-7	breast:
3	chr8:96202933..96207621-chr8:96217016..96224905,7	MCF-7	breast:
4	chr8:96166537..96168297-chr8:96201456..96204172,2	MCF-7	breast:
5	chr8:96202506..96205446-chr8:96207707..96209234,2	K562	blood:
6	chr8:96201546..96203086-chr8:96222450..96224514,2	MCF-7	breast:
7	chr8:96195643..96197320-chr8:96202656..96204555,2	K562	blood:
8	chr8:96145592..96149916-chr8:96202019..96205363,5	MCF-7	breast:
9	chr8:96201649..96205216-chr8:96206550..96209721,4	MCF-7	breast:
10	chr8:96124203..96126069-chr8:96202239..96204530,2	MCF-7	breast:
11	chr8:96186292..96188622-chr8:96201529..96203684,2	MCF-7	breast:
12	chr8:96193279..96197671-chr8:96202932..96206464,6	MCF-7	breast:
13	chr8:96193202..96196443-chr8:96200197..96204026,3	MCF-7	breast:
14	chr8:95907850..95910345-chr8:96201728..96204034,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000175895	Chromatin interaction
ENSG00000175305	Chromatin interaction
ENSG00000156170	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13260423	1.00[ASN][1000 genomes]
rs34356126	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34683152	1.00[ASN][1000 genomes]
rs34961968	1.00[ASN][1000 genomes]
rs7017018	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96194400-96203000	Weak transcription	Placenta	Placenta
2	chr8:96198000-96205000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:96201800-96203000	Enhancers	Spleen	Spleen
4	chr8:96201800-96203400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:96201800-96205600	Enhancers	HMEC	breast
6	chr8:96201800-96205800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:96201800-96206800	Enhancers	Fetal Thymus	thymus
8	chr8:96202400-96203200	Enhancers	HepG2	liver
9	chr8:96202600-96203000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:96202600-96203000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr8:96202600-96203200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr8:96202600-96203200	Enhancers	A549	lung
13	chr8:96202600-96203200	Enhancers	GM12878-XiMat	blood
14	chr8:96202600-96203400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:96202600-96203400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:96202600-96203400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr8:96202600-96203400	Enhancers	K562	blood
18	chr8:96202600-96203600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr8:96202600-96204000	Enhancers	Fetal Muscle Leg	muscle
20	chr8:96202600-96204200	Enhancers	Dnd41	blood
21	chr8:96202600-96204600	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr8:96202600-96205000	Enhancers	Primary B cells from peripheral blood	blood
23	chr8:96202600-96205200	Enhancers	Esophagus	oesophagus
24	chr8:96202600-96205600	Enhancers	Thymus	Thymus
25	chr8:96202600-96205800	Enhancers	NHEK	skin
26	chr8:96202600-96206000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr8:96202600-96206200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr8:96202800-96203000	Enhancers	Left Ventricle	heart
29	chr8:96202800-96203000	Flanking Active TSS	Hela-S3	cervix
30	chr8:96202800-96203200	Enhancers	H1 Cell Line	embryonic stem cell
31	chr8:96202800-96203200	Enhancers	Lung	lung
32	chr8:96202800-96203600	Enhancers	Right Ventricle	heart
33	chr8:96202800-96204400	Enhancers	Primary B cells from cord blood	blood
34	chr8:96202800-96204400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr8:96202800-96204600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr8:96202800-96204800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr8:96202800-96205000	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links