Variant report

Variant	rs6471658
Chromosome Location	chr8:58793653-58793654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11782702	0.83[EUR][1000 genomes]
rs13260815	0.83[EUR][1000 genomes]
rs13272366	0.83[EUR][1000 genomes]
rs17827358	0.83[EUR][1000 genomes]
rs28378457	0.83[EUR][1000 genomes]
rs4738635	0.83[EUR][1000 genomes]
rs4738636	0.89[EUR][1000 genomes]
rs4738637	0.89[EUR][1000 genomes]
rs72660318	0.83[EUR][1000 genomes]
rs7464304	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831323	chr8:58692548-58849862	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58789200-58804000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:58790800-58796000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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