Variant report

Variant	rs6471774
Chromosome Location	chr8:60212880-60212881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10093585	0.89[EUR][1000 genomes]
rs10110690	0.87[EUR][1000 genomes]
rs10464899	0.89[EUR][1000 genomes]
rs10481228	0.92[EUR][1000 genomes]
rs2068784	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3857967	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4332122	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4531041	0.89[EUR][1000 genomes]
rs4579516	0.89[EUR][1000 genomes]
rs5014398	0.86[EUR][1000 genomes]
rs6471776	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6471777	0.89[EUR][1000 genomes]
rs6471779	0.89[EUR][1000 genomes]
rs6981922	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6984554	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6993988	0.86[EUR][1000 genomes]
rs6997052	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7013677	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7013862	0.88[EUR][1000 genomes]
rs7018116	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7818588	0.89[EUR][1000 genomes]
rs7819603	0.91[EUR][1000 genomes]
rs7835993	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831328	chr8:60062971-60288276	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831329	chr8:60162977-60356031	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60196200-60213000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr8:60206800-60213200	Weak transcription	Colon Smooth Muscle	Colon
3	chr8:60210800-60213000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:60210800-60213200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:60211000-60213200	Weak transcription	Fetal Stomach	stomach
6	chr8:60211000-60213200	Weak transcription	Small Intestine	intestine
7	chr8:60211200-60213200	Weak transcription	Fetal Thymus	thymus
8	chr8:60211400-60213600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr8:60212800-60213200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr8:60212800-60213200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr8:60212800-60213200	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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