Variant report

Variant	rs6472014
Chromosome Location	chr8:63277170-63277171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs13266781	0.83[AMR][1000 genomes]
rs13267568	0.83[AMR][1000 genomes]
rs13267809	0.83[AMR][1000 genomes]
rs2351662	0.83[AMR][1000 genomes]
rs2351664	0.83[AMR][1000 genomes]
rs2351665	0.83[AMR][1000 genomes]
rs2351666	0.83[AMR][1000 genomes]
rs2351668	0.83[AMR][1000 genomes]
rs2351669	0.83[AMR][1000 genomes]
rs2351670	0.83[AMR][1000 genomes]
rs2351671	0.83[AMR][1000 genomes]
rs2351672	0.83[AMR][1000 genomes]
rs2351674	0.83[AMR][1000 genomes]
rs2351676	0.83[AMR][1000 genomes]
rs2882745	0.83[AMR][1000 genomes]
rs4442139	0.83[AMR][1000 genomes]
rs4595118	0.83[AMR][1000 genomes]
rs4737601	0.83[AMR][1000 genomes]
rs4737602	0.83[AMR][1000 genomes]
rs4737603	0.83[AMR][1000 genomes]
rs4738961	0.83[AMR][1000 genomes]
rs4738962	0.83[AMR][1000 genomes]
rs6472010	0.83[AMR][1000 genomes]
rs6472011	0.83[AMR][1000 genomes]
rs6472012	0.83[AMR][1000 genomes]
rs6472013	0.83[AMR][1000 genomes]
rs6472025	0.83[AMR][1000 genomes]
rs6472027	0.83[AMR][1000 genomes]
rs6991069	0.83[AMR][1000 genomes]
rs6993342	0.83[AMR][1000 genomes]
rs6999222	0.83[AMR][1000 genomes]
rs7011126	0.83[AMR][1000 genomes]
rs7819648	0.83[AMR][1000 genomes]
rs7819669	0.83[AMR][1000 genomes]
rs7837633	0.83[AMR][1000 genomes]
rs9298063	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019143	chr8:63142202-63390820	Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv890956	chr8:63251640-63346420	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890957	chr8:63266645-63310921	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1024863	chr8:63275987-63439650	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv539636	chr8:63275987-63439650	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63276000-63281800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr8:63276200-63281600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr8:63277000-63277400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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