Variant report

Variant	rs6472092
Chromosome Location	chr8:64278637-64278638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6472102	0.82[EUR][1000 genomes]
rs7003246	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64274800-64279200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr8:64274800-64279200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:64275800-64279000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:64276000-64278800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr8:64276000-64279200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr8:64276000-64279400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:64276800-64279400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr8:64278200-64279200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:64278200-64281800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr8:64278400-64279200	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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