Variant report

Variant	rs6472147
Chromosome Location	chr8:65612697-65612698
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10081461	0.96[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10090584	0.95[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs10092618	0.96[CHB][hapmap];0.88[ASN][1000 genomes]
rs10105184	0.96[CHB][hapmap];0.87[ASN][1000 genomes]
rs10112206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10808738	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs10957321	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11986615	0.96[CHB][hapmap];0.90[ASN][1000 genomes]
rs11995512	0.95[ASN][1000 genomes]
rs11998077	0.95[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs12548518	1.00[CEU][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12681856	0.89[ASN][1000 genomes]
rs13252547	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13260704	0.90[ASN][1000 genomes]
rs1986181	0.95[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs28679790	0.86[ASN][1000 genomes]
rs4236934	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs4327886	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs4395923	0.95[CHB][hapmap]
rs4406437	0.95[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs4437694	0.90[ASN][1000 genomes]
rs4452822	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs4461935	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4486246	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs4507804	0.96[CHB][hapmap]
rs4532631	0.90[ASN][1000 genomes]
rs4549814	0.90[ASN][1000 genomes]
rs4581093	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs4737198	0.85[ASN][1000 genomes]
rs6999999	0.95[CHB][hapmap];0.90[ASN][1000 genomes]
rs7004685	0.96[CHB][hapmap]
rs7005708	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs7815372	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs7817744	0.95[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs7827287	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7830315	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7834854	0.95[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs7842714	0.80[EUR][1000 genomes]
rs9298087	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs9298088	0.95[CHB][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65605600-65615200	Weak transcription	Aorta	Aorta
2	chr8:65612200-65613200	Enhancers	Brain Cingulate Gyrus	brain
3	chr8:65612200-65613800	Enhancers	Fetal Brain Female	brain
4	chr8:65612400-65613200	Enhancers	Brain Anterior Caudate	brain
5	chr8:65612400-65613800	Enhancers	Brain Hippocampus Middle	brain
6	chr8:65612600-65612800	Enhancers	Pancreas	Pancrea
7	chr8:65612600-65612800	Enhancers	Spleen	Spleen
8	chr8:65612600-65613000	Enhancers	Brain Angular Gyrus	brain
9	chr8:65612600-65613000	Enhancers	Brain Substantia Nigra	brain
10	chr8:65612600-65613200	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr8:65612600-65613800	Weak transcription	Brain Germinal Matrix	brain
12	chr8:65612600-65614000	Enhancers	Fetal Brain Male	brain

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