Variant report

Variant	rs6472234
Chromosome Location	chr8:66816622-66816623
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1108214	0.82[ASN][1000 genomes]
rs11985554	0.82[ASN][1000 genomes]
rs11985589	0.80[ASN][1000 genomes]
rs11987304	0.87[ASN][1000 genomes]
rs11987611	0.82[ASN][1000 genomes]
rs11988417	0.82[ASN][1000 genomes]
rs11988589	0.82[ASN][1000 genomes]
rs11993927	0.82[ASN][1000 genomes]
rs11994927	0.82[ASN][1000 genomes]
rs11995310	0.83[ASN][1000 genomes]
rs11995784	0.84[ASN][1000 genomes]
rs11998621	0.82[ASN][1000 genomes]
rs16932382	0.87[ASN][1000 genomes]
rs2002333	0.82[ASN][1000 genomes]
rs2002334	0.82[ASN][1000 genomes]
rs34174890	0.87[ASN][1000 genomes]
rs3901084	0.91[ASN][1000 genomes]
rs4129057	0.91[ASN][1000 genomes]
rs4620273	0.87[ASN][1000 genomes]
rs55695598	0.85[ASN][1000 genomes]
rs56246853	0.82[ASN][1000 genomes]
rs56747456	0.82[ASN][1000 genomes]
rs57683289	0.82[ASN][1000 genomes]
rs57690026	0.82[ASN][1000 genomes]
rs58881093	0.87[ASN][1000 genomes]
rs62506592	0.87[ASN][1000 genomes]
rs62506593	0.87[ASN][1000 genomes]
rs62506596	0.82[ASN][1000 genomes]
rs66644630	0.91[ASN][1000 genomes]
rs67768803	0.87[ASN][1000 genomes]
rs6981019	0.82[ASN][1000 genomes]
rs6992232	0.82[ASN][1000 genomes]
rs6997506	0.82[ASN][1000 genomes]
rs7001181	0.82[ASN][1000 genomes]
rs72650541	0.87[ASN][1000 genomes]
rs7841695	0.82[ASN][1000 genomes]
rs870077	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66816200-66816800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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