Variant report

Variant	rs6473601
Chromosome Location	chr8:52372900-52372901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10958267	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1594499	0.82[AFR][1000 genomes]
rs4588847	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7845343	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52355400-52374000	Weak transcription	Right Ventricle	heart
2	chr8:52356800-52396200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr8:52366200-52374000	Weak transcription	Right Atrium	heart
4	chr8:52366400-52374000	Weak transcription	Left Ventricle	heart
5	chr8:52369200-52373000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr8:52370200-52373200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:52371400-52373600	Weak transcription	NHDF-Ad	bronchial
8	chr8:52371800-52373800	Weak transcription	NH-A	brain
9	chr8:52372200-52373200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:52372200-52373600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:52372200-52373800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:52372400-52374200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:52372800-52373800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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