Variant report

Variant	rs6473859
Chromosome Location	chr8:54510983-54510984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11785377	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12549903	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12549929	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13250079	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13250120	0.91[EUR][1000 genomes]
rs2086073	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2086074	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4873261	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6415671	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6983383	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7463471	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs978138	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs978139	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1813750	chr8:54471135-54528984	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2758159	chr8:54474589-54737473	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759616	chr8:54474589-54737473	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv12044	chr8:54510310-54518345	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
5	esv15341	chr8:54510310-54529246	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54510800-54511200	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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